View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16464_low_6 (Length: 214)
Name: NF16464_low_6
Description: NF16464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16464_low_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 44924480 - 44924277
Alignment:
| Q |
4 |
tttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttgatgctgcgtgtaagagaacattatttagg |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44924480 |
tttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttgatgctgcgtgtaagagaatatta------ |
44924387 |
T |
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| Q |
104 |
ctttagctgtttgatattgcttattttgatggtatacccgtgtatccaaccgaaactttgatccaactatgcttcatacggtgtagctctttcctgtgcc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
44924386 |
-tttagctgtttgatattgcttattttgatggtatacctgtgtatccaaccgaaactttgatccaactatgcttcatatggtgtaggactttcctgtgcc |
44924288 |
T |
|
| Q |
204 |
ctttgagaact |
214 |
Q |
| |
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|||||||||| |
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| T |
44924287 |
ttttgagaact |
44924277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 6908509 - 6908338
Alignment:
| Q |
1 |
tcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttgatgctgcgtgtaagagaacattattt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |
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| T |
6908509 |
tcttttcttttctaagtatta-gttttgctccaatacatttgatgatctttgtgataattgaactttttacttgatgctgtgtgtaagagaatatta--- |
6908414 |
T |
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| Q |
101 |
aggctttagctgtttgatattgcttattttgatggtatacccgtgtatccaaccgaaactttgatccaactatgcttcat |
180 |
Q |
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| T |
6908413 |
----tttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttgatccaactatgcttcat |
6908338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 6901714 - 6901855
Alignment:
| Q |
1 |
tcttttcttttctaagtattaagttttgctccaatacatttg-atgatctttgtgataattgaaccttttacttgatgctgcgtgtaagagaacattatt |
99 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||| || ||||||||||| |||| |
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| T |
6901714 |
tcttttcttttccaagtattaagttttgctccaatacatttgaattatctttgttataattgaaccttttacctgatggtgtgtgtaagagaatatta-- |
6901811 |
T |
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| Q |
100 |
taggctttagctgtttgatattgcttattttgatggtatacccgtgtat |
148 |
Q |
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|||||| |||||||||||| | ||||||||||||| |||||||| |
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| T |
6901812 |
-----tttagcagtttgatattgcatgttttgatggtatatccgtgtat |
6901855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 202477 - 202649
Alignment:
| Q |
1 |
tcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttacttgatgctgcgtgtaagagaacattattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |
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| T |
202477 |
tcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgatgattgaaccttttacttgatgctctgtgtaagagaatatta--- |
202573 |
T |
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| Q |
101 |
aggctttagctgtttgatattgcttattttgatggtatacccgtgtatccaaccgaaactttgatccaactatgcttcat |
180 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
202574 |
----tttagctgtttgatattgcttgttttgatggtatacccgtgtatccaaccgaaactttgatccaactatgcttcat |
202649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 206623 - 206482
Alignment:
| Q |
1 |
tcttttcttttctaagtattaagttttgctccaatacatttga-tgatctttgtgataattgaaccttttacttgatgctgcgtgtaagagaacattatt |
99 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| || ||||||||||| |||| |
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| T |
206623 |
tcttttcttttccaagtattaagttttgctccaatacatttaaatgatctttgttataattgaaccttttacttgatggtgtgtgtaagagaatatta-- |
206526 |
T |
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| Q |
100 |
taggctttagctgtttgatattgcttattttgatggtatacccgtgtat |
148 |
Q |
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|||||| |||||||||||| | ||||||||||||| |||||||| |
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| T |
206525 |
-----tttagcagtttgatattgcatgttttgatggtatatccgtgtat |
206482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 29514676 - 29514747
Alignment:
| Q |
2 |
cttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgataattgaaccttttactt |
73 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29514676 |
cttttcttttccaagtatagagttttgctccaatacatttgatgatctttatgataattgaaccttttactt |
29514747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 213
Target Start/End: Original strand, 43632255 - 43632417
Alignment:
| Q |
43 |
atgatctttgtgataattgaaccttttacttgatgctgcgtgtaagagaacattatttaggctttagctgtttgatattgcttattttgatggtataccc |
142 |
Q |
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| T |
43632255 |
atgatctttgtgataattgaaccttttacttgatgttgtatgtaagaa---------tag---ttagcagtttgattttgcatattttgatggtataccc |
43632342 |
T |
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| Q |
143 |
gtgtat----ccaaccgaaactttgatccaactatgcttcatacggtgtagctctttcctgtgccctttgagaac |
213 |
Q |
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| T |
43632343 |
gtgtatccaaccaaccaaaactttgaatcaactgtgcttcatatggtgtaggtctttcccgtgccttttgcgaac |
43632417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 43997894 - 43997781
Alignment:
| Q |
105 |
tttagctgtttgatattgcttattttgatggtataccc-gtgtatccaaccga----aactttgatccaactatgcttcatacggtgtagctctttcctg |
199 |
Q |
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|||||| ||||||| |||| |||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||| ||||||| ||||||| | |
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| T |
43997894 |
tttagcagtttgattttgcatattttgatggtataccccgtgtatccaaccaaccaaaactttgaatcaactatgcttcatatggtgtaggtctttcccg |
43997795 |
T |
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| Q |
200 |
tgccctttgagaac |
213 |
Q |
| |
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|||| |||| |||| |
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| T |
43997794 |
tgccttttgggaac |
43997781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24652993 - 24653035
Alignment:
| Q |
1 |
tcttttcttttctaagtattaagttttgctccaatacatttga |
43 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24652993 |
tcttttcttttccaagtattaagttttgctccaatacatttga |
24653035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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