View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16465_high_4 (Length: 438)
Name: NF16465_high_4
Description: NF16465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16465_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 36901830 - 36901418
Alignment:
| Q |
17 |
acaagcaatacattttgtttgcttgagttagtgctacggagggcagttggtgcttcgattagaatttctttcaccatttcatatatgccatttctagctg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36901830 |
acaagcaatacattttgtttgcttgagttagtactacggagggcagttggtgcttcgattagaatttctttcaccatttcatatatgccatttctagctg |
36901731 |
T |
|
| Q |
117 |
caaccaaaattggtgccttctccttcacgtatgccattttgtctcgttcacttttttcttcaatcatcctgcttgttccaactgtcactgtcaattcaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36901730 |
caaccaaaattggtgccttctccttcacatatgccattttgtctcgttcacttttttcttcaatcatcctgcttgttccaactgtcactgtcaattcaaa |
36901631 |
T |
|
| Q |
217 |
ctatggagggttaaaatgccattaatcttctttgtatatattaccatccgtttcaaaatagcaatattaccaaaatattttcatggattagagagaatgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36901630 |
ctatggagggttaaaatgccattaatcttctttgtatatattaccatccgtttcaaaatagcaatattaccataatattttcatggattagagagaatgt |
36901531 |
T |
|
| Q |
317 |
acagaggagagattagattcatcatggaaagtgttagataataagatttagcttatgttattaggccttttatgtttatcagttagtagaatccattagg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36901530 |
acagaggagagattagattcatcatggaaagtgttagataataagatttagcttatgttattaggccttttatctttatcagttagtagaatccattagg |
36901431 |
T |
|
| Q |
417 |
tttgtagtattat |
429 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
36901430 |
tttgtaatattat |
36901418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 36892805 - 36892691
Alignment:
| Q |
17 |
acaagcaatacattttgtttgcttgagttagtgctacggagggcagttggtgcttcgattagaatttctttcaccatttcatatatgccatttctagctg |
116 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||| || | | |||| ||||| ||| ||||||||||| || ||||||||| ||| |||||| | |||| |
|
|
| T |
36892805 |
acaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtacttttattagaatttcgttaaccatttcaactattccattttttgctg |
36892706 |
T |
|
| Q |
117 |
caaccaaaattggtg |
131 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
36892705 |
caaccaaaaatggtg |
36892691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University