View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16465_high_5 (Length: 427)
Name: NF16465_high_5
Description: NF16465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16465_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 55171985 - 55172401
Alignment:
| Q |
1 |
caacagtggtagccaagatggaaatgtagttggttccaaccttgaagttagctggttgctcaaattcaaaagatttttcttcatgggtaccatgatcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55171985 |
caacagtggtagccaagatggaaatgtagttggttccaaccttgaagttagctggttgctcaaattcaaaagatttttcttcatgggtaccatgatcagt |
55172084 |
T |
|
| Q |
101 |
acctattacaaatcaaagttagaatcatataaaactcttgccatttcctctcctctcactcaccattgccgtttattattgaaattatgttcttaccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
55172085 |
acctattacaaatcaaagttagaatcatataaaactcttgccatttcctctcctatcactcaccattgtcgtttattattgaaattatgttcttaccaat |
55172184 |
T |
|
| Q |
201 |
gtattgtccattaacaaatgcggatagtgtgtgtccaagactcataatacgaagaattgcactcttctttggcaagtcttctggacccaactcaaagctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55172185 |
gtattgtccattaacaaatgcggatagtgtgtgtccaagactcataatacgaagaattgcactcttctttggcaagtcttctggacccaactcaaagctg |
55172284 |
T |
|
| Q |
301 |
cattagaaaaaccataattaatttatgatagatgtggggaatgagttgcatatttcaaatttaattaaggttgaatgaatgaatcctcacctggtggtgt |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55172285 |
cattagaaaaaccataaataatttatgatagatgtggggaatgagttgcatatttcaaatttaattaaggttgaatgaatgaatcctcacctggtggtgt |
55172384 |
T |
|
| Q |
401 |
accatccataatctgtg |
417 |
Q |
| |
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||||||||||||||||| |
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| T |
55172385 |
accatccataatctgtg |
55172401 |
T |
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