View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16465_low_2 (Length: 516)
Name: NF16465_low_2
Description: NF16465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16465_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 83 - 503
Target Start/End: Original strand, 4196698 - 4197121
Alignment:
| Q |
83 |
agttccttatgtggccatggatatttctacaatataacaatttgtgttatgcctgaaaatccattgtcttttggagcaaagaataagtaatgtatgttaa |
182 |
Q |
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| T |
4196698 |
agttccttatgtggccatggatatttctacaacataacaatttgtgttatgcctgaaaattcattgtcttttggagcaaagaataagtactgtatgttaa |
4196797 |
T |
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| Q |
183 |
attggaatcaaattttagtaattggtataagcaaatggctgctgattgttaagtttcttagatgaatgaatgcttagatatcctgtttctagacagaaaa |
282 |
Q |
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| T |
4196798 |
attggaatcaaattttagtaattggtataagcaaatggctgctgattgttaagtttcttagatgaatgaatgcttagatatcctgtttctagacagaaaa |
4196897 |
T |
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| Q |
283 |
cagacaacgcttgtataattggaacttatatgatgtgggaaactaaga---nnnnnnnnnncttctattgaaatctactaaagaaatttcacatcttttc |
379 |
Q |
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| T |
4196898 |
cagacaacgcttgtataattggaacttatatgatgtgggaaactaagattttttttttttttttctattgaaatctactaaagaaatttcacatcttttc |
4196997 |
T |
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| Q |
380 |
tacagtttaagttgtctcgtgaactaaaaagtaaaatggggttggttacacttcaaagggtggaaacagtttacatttacacttactgattttttaatgc |
479 |
Q |
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| T |
4196998 |
taccgtttaagttgtctcgtgaactaaaaagtaaaatggggttggttacacttcaaagggtggaaacagtttacatttacacttactgattttttaatgc |
4197097 |
T |
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| Q |
480 |
ttcaccttttggtgatctgtatct |
503 |
Q |
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| T |
4197098 |
ttcaccttttggtgatctgtatct |
4197121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 4187866 - 4187917
Alignment:
| Q |
85 |
ttccttatgtggccatggatatttctacaatataacaatttgtgttatgcct |
136 |
Q |
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| T |
4187866 |
ttccttatgcggcaatggatatttgtactacataacaatttgtgttatgcct |
4187917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 382
Target Start/End: Original strand, 4188218 - 4188253
Alignment:
| Q |
347 |
ttgaaatctactaaagaaatttcacatcttttctac |
382 |
Q |
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| T |
4188218 |
ttgaaatctactaaagaaaattcacatcttttctac |
4188253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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