View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16465_low_6 (Length: 422)
Name: NF16465_low_6
Description: NF16465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16465_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 39495213 - 39495619
Alignment:
| Q |
10 |
ttttcttgtttacttatcttttatggcatggagattcttatcttttggaatagatcataaatgagtgtgaatctgtctcctaattagtaactattacaga |
109 |
Q |
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| T |
39495213 |
ttttcttatttacttatcttttatggcatggagattcttatcttttggaatagatcataaatgagtgtgaatctgtctcctaattagtaactattacaga |
39495312 |
T |
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| Q |
110 |
ataattgaggtatatccatcttgtatcaacttgctttgtcttactcttaccacttaaattatagataagttcctcgtgctaatgccgtcaaattaacgtg |
209 |
Q |
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| T |
39495313 |
ataattgaggtatatccatcttgtatcaacttgctttgtcttactcttaccacttaaattatagataagttcctcgtgctaatgccgtcaaattaacgtg |
39495412 |
T |
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| Q |
210 |
atacgatgactaacataacaacttatgtaattatcagttactaatactattaacactgcataatagctta--ccaatatactctacacaatgcctgtatt |
307 |
Q |
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| T |
39495413 |
atacgatgactaacataacaacttatgtaattatcagttactaatactattcacactgcataatagcttaccccaatatactctacacaatgcctgtatt |
39495512 |
T |
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| Q |
308 |
cacaaatcataagcactaaaccatgaagttaaattcataaaacattagtagtgtaccatcaccctgctatataatatgcattaatctattttctactctc |
407 |
Q |
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| T |
39495513 |
cacaaatcataagcactaaaccatgaagttaaattcataaaacattagtagtgtaccatcaccctgctatataatatgcattaatctattttctactctc |
39495612 |
T |
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| Q |
408 |
tgatgat |
414 |
Q |
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| T |
39495613 |
tgatgat |
39495619 |
T |
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