View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16466_high_1 (Length: 583)
Name: NF16466_high_1
Description: NF16466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16466_high_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 10 - 583
Target Start/End: Original strand, 4972597 - 4973170
Alignment:
| Q |
10 |
tgagatgaacatgccaaatctaatcaattatgcgcatcgtaagttactcgatcaatcgaataaccttccagccgcaccttatagtggtggacctaaaaca |
109 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4972597 |
tgagatgaacatgccaaatctaatcaattatgcgcgtcgtaagttactcgatcaatcgaataaccttccagccgcaccttatagtggtggacctaaaaca |
4972696 |
T |
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| Q |
110 |
gatttcagtaaccttccaattagcattagtagtggatcttttccagctgttccagatgcgaataagaaacaaaatcagtcacatacaccgttgccttctg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4972697 |
gatttcagtaaccttccaattagcattagtagtggatcttttccagctgttccagatgcgaataagaaacaaaatcagtcacatacaccgttgccttctg |
4972796 |
T |
|
| Q |
210 |
cctcggatccttcacatgatggaaagcaagcaagtcaagaccaccccaaaacttttggaaattattggaagtatatagttattatcatagctgtgtttgt |
309 |
Q |
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| T |
4972797 |
cctcggatccttcacatgatggaaagcaagcaagtcaagaccaccccaaaacttttggaaattattggaagtatatagttattatcatagctgtgtttgt |
4972896 |
T |
|
| Q |
310 |
gttggtgattctgatcatagttcttctttgcttttggaaaaaaccagcagctaaaataattaaaccttggagtacaggaataagtggacagttgcaaaaa |
409 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4972897 |
gatggtgattctgatcatagttcttctttgcttttggaaaaaaccagcagctaaaataattaaaccttggaatacaggaataagtggacagttgcaaaaa |
4972996 |
T |
|
| Q |
410 |
gcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaattatttttatcgttattgtgttgacaacaatgtannnn |
509 |
Q |
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| T |
4972997 |
gcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaattatttttatcattattgtgttgacaacaatgtatttt |
4973096 |
T |
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| Q |
510 |
nnnncttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtgaggatttca |
583 |
Q |
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| T |
4973097 |
ttttcttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtgaggatttca |
4973170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 10 - 583
Target Start/End: Original strand, 4990505 - 4991078
Alignment:
| Q |
10 |
tgagatgaacatgccaaatctaatcaattatgcgcatcgtaagttactcgatcaatcgaataaccttccagccgcaccttatagtggtggacctaaaaca |
109 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4990505 |
tgagatgaacatgccaaatctaatcaattatgcgcgtcgtaagttactcgatcaatcgaataaccttccagccgcaccttatagtggtggacctaaaaca |
4990604 |
T |
|
| Q |
110 |
gatttcagtaaccttccaattagcattagtagtggatcttttccagctgttccagatgcgaataagaaacaaaatcagtcacatacaccgttgccttctg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4990605 |
gatttcagtaaccttccaattagcattagtagtggatcttttccagctgttccagatgcgaataagaaacaaaatcagtcacatacaccgttgccttctg |
4990704 |
T |
|
| Q |
210 |
cctcggatccttcacatgatggaaagcaagcaagtcaagaccaccccaaaacttttggaaattattggaagtatatagttattatcatagctgtgtttgt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4990705 |
cctcggatccttcacatgatggaaagcaagcaagtcaagaccaccccaaaacttttggaaattattggaagtatatagttattatcatagctgtgtttgt |
4990804 |
T |
|
| Q |
310 |
gttggtgattctgatcatagttcttctttgcttttggaaaaaaccagcagctaaaataattaaaccttggagtacaggaataagtggacagttgcaaaaa |
409 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4990805 |
gatggtgattctgatcatagttcttctttgcttttggaaaaaaccagcagctaaaataattaaaccttggaatacaggaataagtggacagttgcaaaaa |
4990904 |
T |
|
| Q |
410 |
gcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaattatttttatcgttattgtgttgacaacaatgtannnn |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4990905 |
gcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaattatttttatcattattgtgttgacaacaatgtatttt |
4991004 |
T |
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| Q |
510 |
nnnncttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtgaggatttca |
583 |
Q |
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| T |
4991005 |
ttttcttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtgaggatttca |
4991078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 35833424 - 35833262
Alignment:
| Q |
24 |
caaatctaatcaattatgcgcatcgtaagttactcgatcaatcgaataaccttccagccgcaccttatagtggtggacctaaaacagatttcagtaacct |
123 |
Q |
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|||||||||||| || ||| | ||||||||| || ||||| || ||||||||| |||| ||||||||||| |||||||||| | | | ||||| | |
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| T |
35833424 |
caaatctaatcagttctgcacgtcgtaagttgcttgatcagtccaataaccttgcagctgcaccttatagcggtggacctactatacagatcagtgttat |
35833325 |
T |
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| Q |
124 |
tccaattagcattagtagtggatcttttccagctgttccagatgcgaataagaaacaaaatca |
186 |
Q |
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||||||| || |||||||||||||| || ||||| |||||||| ||||||||||||||||| |
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| T |
35833324 |
tccaatttcaataagtagtggatctttcccggctgtgccagatgccaataagaaacaaaatca |
35833262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 425
Target Start/End: Complemental strand, 35833062 - 35833020
Alignment:
| Q |
383 |
acaggaataagtggacagttgcaaaaagcttttataacaggta |
425 |
Q |
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| T |
35833062 |
acaggaataagtggacagttgcagaaagcatttgtaacaggta |
35833020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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