View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16466_high_3 (Length: 377)
Name: NF16466_high_3
Description: NF16466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16466_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 2849378 - 2849030
Alignment:
| Q |
11 |
cacagaataactgcaaaaactgattacacagttttacattacaaatgcaagtaagttccacaataaaccaccaaagccaaaactaccctccttttcaacg |
110 |
Q |
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| T |
2849378 |
cacacaataactgcaaaaactgattacacaattttacattacaaatgcaagtaagttccacaataaaccaccaaagccaaaactaccctccttttcaacg |
2849279 |
T |
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| Q |
111 |
aatacatagactattttttaagcaaatctatgactaaaagtgtacaaatctaccaatagattctaacattttctttctacttattcaccaaacaaaaaat |
210 |
Q |
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| T |
2849278 |
aatacatagactattttttaagcaaatctatgactaaaaatgtacaaatctaccaatagattctaacattttctttctacttattcaccaaacaaaaaat |
2849179 |
T |
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| Q |
211 |
gtgttagtaacnnnnnnnntctacatcctgagtcctaatttcaagatcctcactttttgtaataaaaagaatacaatgttacagaaaagacccaagtcaa |
310 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2849178 |
gtgttggtaacaaaaaaaatctacatcctgagtcctaatttcaagatcctcactctttgtaattaaaagaatacaatgttacagaaaagacccaagtcaa |
2849079 |
T |
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| Q |
311 |
tccttcaatggatcaaatcagatgaacaccggtataaacctgcaccgac |
359 |
Q |
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| T |
2849078 |
tccttcaatggatcaaatcagatgaacaccggtttaaacctgcaccgac |
2849030 |
T |
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