View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16466_high_8 (Length: 217)
Name: NF16466_high_8
Description: NF16466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16466_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 34589283 - 34589086
Alignment:
| Q |
1 |
agatcccttacctacctgttgagtagtgttaatttcagtggcaacactcaaaactgaaaactgagactttcctttaacaccatgaaatccaattccacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34589283 |
agatcccttacctacctgttgagtagcgttaatttcagtggcaacactcaaaactgaaaactgagactttcctttaacaccatgaaatccaattccacca |
34589184 |
T |
|
| Q |
101 |
caaaacttgcacccagatacttgccctgcaaagccacaaccattaaatatcgttgacaatcacatattcacagtgtcagaaaaatccagtttccattt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34589183 |
caaaacttgcacccagatacttgccctgcaaagccacaaccattaaatatcgttgacaatcacatattcacagtgtcagaaaaatccagtttccattt |
34589086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University