View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16466_low_2 (Length: 401)

Name: NF16466_low_2
Description: NF16466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16466_low_2
NF16466_low_2
[»] chr4 (9 HSPs)
chr4 (13-382)||(45964688-45965057)
chr4 (13-171)||(45974303-45974461)
chr4 (213-370)||(45979667-45979824)
chr4 (213-361)||(45973452-45973600)
chr4 (21-167)||(45857388-45857534)
chr4 (21-167)||(45869941-45870087)
chr4 (21-171)||(45980755-45980895)
chr4 (215-334)||(45957645-45957764)
chr4 (245-360)||(45871158-45871273)
[»] chr5 (2 HSPs)
chr5 (215-272)||(40894049-40894106)
chr5 (241-340)||(33132280-33132379)
[»] scaffold0003 (1 HSPs)
scaffold0003 (229-294)||(298673-298738)


Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Complemental strand, 45965057 - 45964688
Alignment:
Q  13 aaaaagaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcaca 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45965057 aaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcaca 45964958  T
Q  113 ggttgaacttcttagttctgagttgaacatttctggttgcaggcatctctaatacaaaagatagaaatgagtnnnnnnnnnctctacgaagtaaaagagg 212  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||         |||||||||||||||||||    
T  45964957 ggttgaacttcttagttctgtgttgaacatttctggttgcaggccactctaatacaaaagatagaaatgagtaaaaaaaaactctacgaagtaaaagagg 45964858  T
Q  213 ttgcataagaagcaagcagggagccaccatagagtgttccattgtactcttgaacctcactagccgcttcaggaccatactcttctacaagagacacaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45964857 ttgcataagaagcaagcagggagccaccatagagtgttccattgtactcttgaacctcactagccgcttcaggaccatactcttctacaagagacacaat 45964758  T
Q  313 ctgtaaaactaaaccattttcattcactctaacacctgaaggcaaagtagaacatcctggagatcttggt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45964757 ctgtaaaactaaaccattttcattcactctaacacctgaaggcaaagtagaacatcctggagatcttggt 45964688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 45974461 - 45974303
Alignment:
Q  13 aaaaagaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcaca 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45974461 aaaaggaatgacaacaataaaatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcaca 45974362  T
Q  113 ggttgaacttcttagttctgagttgaacatttctggttgcaggcatctctaatacaaaa 171  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  45974361 ggttgaacttcttagttctgtgttgaacatttctggttgcaggcctctctaatacaaaa 45974303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 213 - 370
Target Start/End: Complemental strand, 45979824 - 45979667
Alignment:
Q  213 ttgcataagaagcaagcagggagccaccatagagtgttccattgtactcttgaacctcactagccgcttcaggaccatactcttctacaagagacacaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| |||||||| ||| |    
T  45979824 ttgcataagaagcaagcagggagccaccatagagtgttccattgtactcttgaacctcactagctacttcagcaccatactcttcaacaagagagacagt 45979725  T
Q  313 ctgtaaaactaaaccattttcattcactctaacacctgaaggcaaagtagaacatcct 370  Q
    ||||||||||| |||||| ||  ||||||||||||| |||| ||||||||||||||||    
T  45979724 ctgtaaaactataccattctcggtcactctaacacccgaagacaaagtagaacatcct 45979667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 213 - 361
Target Start/End: Complemental strand, 45973600 - 45973452
Alignment:
Q  213 ttgcataagaagcaagcagggagccaccatagagtgttccattgtactcttgaacctcactagccgcttcaggaccatactcttctacaagagacacaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||    
T  45973600 ttgcataagaagcaagcagggagccaccatagagtgttccattgtactcttgaacctcactagccgcttcaagaccatactcctcaacaagagacacaat 45973501  T
Q  313 ctgtaaaactaaaccattttcattcactctaacacctgaaggcaaagta 361  Q
    ||||||||||| |||||| ||  |||||||||| || |||| |||||||    
T  45973500 ctgtaaaactataccattctcggtcactctaacgcccgaagacaaagta 45973452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 45857388 - 45857534
Alignment:
Q  21 tgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaac 120  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  45857388 tgacaacaataaaatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctgcaacatgaattaattttcacaggctgaac 45857487  T
Q  121 ttcttagttctgagttgaacatttctggttgcaggcatctctaatac 167  Q
    |   ||||||||| |||||||||||||| ||||||| | ||||||||    
T  45857488 tctatagttctgatttgaacatttctggatgcaggcctatctaatac 45857534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 45869941 - 45870087
Alignment:
Q  21 tgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||    
T  45869941 tgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattcttctgcaacatgaattaattttcacaggctgaac 45870040  T
Q  121 ttcttagttctgagttgaacatttctggttgcaggcatctctaatac 167  Q
    | | ||||||||| |||||| ||||||| ||||||| | ||||||||    
T  45870041 tccatagttctgatttgaacttttctggatgcaggcctatctaatac 45870087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 45980895 - 45980755
Alignment:
Q  21 tgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaac 120  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||   |||||||||||||||||||||          
T  45980895 tgacaacaataaaatggacatttctgctatatatgcttctaaaggtaaccaaaatattattcattgttct---acatgaattaattttcacagg------ 45980805  T
Q  121 ttcttagttctgagttgaacatttctggttgcaggcatctctaatacaaaa 171  Q
     || ||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  45980804 -tcatagttctgaattgaacatttctgcttgcaggcctctctaatacaaaa 45980755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 45957764 - 45957645
Alignment:
Q  215 gcataagaagcaagcagggagccaccatagagtgttccattgtactcttgaacctcactagccgcttcaggaccatactcttctacaagagacacaatct 314  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| | ||||  |||||||||  | ||||||||  |||| |    
T  45957764 gcataagaagcgagcagggagccagcatagagttttccattgtactcttgaacctcactagctggttcaataccatactcggcaacaagagatgcaattt 45957665  T
Q  315 gtaaaactaaaccattttca 334  Q
    |||||| || || |||||||    
T  45957664 gtaaaattatacgattttca 45957645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 360
Target Start/End: Original strand, 45871158 - 45871273
Alignment:
Q  245 agtgttccattgtactcttgaacctcactagccgcttcaggaccatactcttctacaagagacacaatctgtaaaactaaaccattttcattcactctaa 344  Q
    |||||||||||||||||||||||||||||||  | || || ||||| |||  |   |||||| ||||||||||||| ||||| ||| ||| ||||||| |    
T  45871158 agtgttccattgtactcttgaacctcactagttggttgagtaccatgctcagcaggaagagatacaatctgtaaaattaaacgattctcagtcactctga 45871257  T
Q  345 cacctgaaggcaaagt 360  Q
    | |||| |||||||||    
T  45871258 ctcctgtaggcaaagt 45871273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 40894049 - 40894106
Alignment:
Q  215 gcataagaagcaagcagggagccaccatagagtgttccattgtactcttgaacctcac 272  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  40894049 gcataagaagcaagcagggagccacaatagagtgttccattgtactcttgaacgtcac 40894106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 340
Target Start/End: Complemental strand, 33132379 - 33132280
Alignment:
Q  241 atagagtgttccattgtactcttgaacctcactagccgcttcaggaccatactcttctacaagagacacaatctgtaaaactaaaccattttcattcact 340  Q
    |||||||||| |||| |||||||||| ||||||||| | || || |||||||||     ||||||| ||||||||||||| ||||||||| ||| |||||    
T  33132379 atagagtgtttcattatactcttgaatctcactagctggttgagtaccatactcagaaccaagagatacaatctgtaaaattaaaccattctcagtcact 33132280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 298673 - 298738
Alignment:
Q  229 cagggagccaccatagagtgttccattgtactcttgaacctcactagccgcttcaggaccatactc 294  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| | ||||| |||||||||    
T  298673 cagggagccagcatagagttttccattgtactcttgaacctcactagctggttcagtaccatactc 298738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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