View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16466_low_4 (Length: 370)
Name: NF16466_low_4
Description: NF16466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16466_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 36437768 - 36438108
Alignment:
| Q |
18 |
caatgcagtgtccaacaagacattgctggcctttaagtctctatgaataattcttaatcgcgagtcgtgatgaagatataagatccctctagcgacacca |
117 |
Q |
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| T |
36437768 |
caatgcagtgtccaacaagacattgctggcctttaagtctctatgaataattcttaatcgcgagtcgtgatgaagatataagatccctctagcgacacca |
36437867 |
T |
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| Q |
118 |
cagataatatcaaaccgctttctccagtctagctcggaacttttagatttatctagaccaaaaatcatggtatgatgagtgaattaaggatgttgaatca |
217 |
Q |
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| T |
36437868 |
cagataatatcaaaccgctttctccagtctagctcggaacttttagatttatctagaccaaaaatcatggtatgatgagtgaattaaggatgttgaatca |
36437967 |
T |
|
| Q |
218 |
attgtttaggaaatgacattgatatatatacaaagtgaaaacttatgtactaatgaagcaaaggtgaaataaaacaacacataccaaaaatgaaaaagtc |
317 |
Q |
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| T |
36437968 |
attgtttaggaaatgacattgatatatatacaaagtgaaaacttatgtactaatgaagcaaaggtgaaataaaacaacacataccaaaaatgaaaaagtc |
36438067 |
T |
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| Q |
318 |
taagcttttgttaggcaaatactcatagattaacatcttct |
358 |
Q |
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| T |
36438068 |
taagcttttgttaggcaaatactcatagattaacatcttct |
36438108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 220 - 320
Target Start/End: Original strand, 36377245 - 36377343
Alignment:
| Q |
220 |
tgtttaggaaatgacattgatatatatacaaagtgaaaacttatgtactaatgaagcaaaggtgaaataaaacaacacataccaaaaatgaaaaagtcta |
319 |
Q |
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| T |
36377245 |
tgtttaggaaatgacattgctatacatccaaagtgacagattaagtactaatgcaaaaaatgtgaaa--aaacaacaaataccaaaaatgaaaaagtcta |
36377342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 220 - 320
Target Start/End: Original strand, 36391218 - 36391316
Alignment:
| Q |
220 |
tgtttaggaaatgacattgatatatatacaaagtgaaaacttatgtactaatgaagcaaaggtgaaataaaacaacacataccaaaaatgaaaaagtcta |
319 |
Q |
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| T |
36391218 |
tgtttaggaaatggcattgctatacatccaaagtgacagattaagtactaatgcagcaaaattggaa--aaacaacacataccaaaaatgaaaaagtcta |
36391315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 36400828 - 36400862
Alignment:
| Q |
18 |
caatgcagtgtccaacaagacattgctggccttta |
52 |
Q |
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| T |
36400828 |
caatgcagtctccaacaagacattgctggccttta |
36400862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 31697144 - 31697104
Alignment:
| Q |
55 |
tctctatgaataattcttaatcgcgagtcgtgatgaagata |
95 |
Q |
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| T |
31697144 |
tctctatgaataattcttaatcgagaatcttgatgaagata |
31697104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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