View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16466_low_5 (Length: 334)
Name: NF16466_low_5
Description: NF16466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16466_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 6133660 - 6133966
Alignment:
| Q |
19 |
aatcaacacctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6133660 |
aatcaacacctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattct |
6133759 |
T |
|
| Q |
119 |
tgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttattgatgacatgtcttcttcttcagtgatatgtttgagg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
6133760 |
tgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttatagatgacatgtcttcttcttcaatgatatgtttgagg |
6133859 |
T |
|
| Q |
219 |
tatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattttgtgaatgtttatggttcattgtatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6133860 |
tatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattttgtgaacgtttatggttcattgtatg |
6133959 |
T |
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| Q |
319 |
atgatgt |
325 |
Q |
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||||||| |
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| T |
6133960 |
atgatgt |
6133966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 20599840 - 20600146
Alignment:
| Q |
19 |
aatcaacacctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattct |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20599840 |
aatcaacacctaattttgtgaaaagggtgcttagagaagcacttggcgacgacgttagcgatttcaaactactggtatttgctgttcatgcttttattct |
20599939 |
T |
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| Q |
119 |
tgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttattgatgacatgtcttcttcttcagtgatatgtttgagg |
218 |
Q |
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||||||||||||| |||||||||||| |||||| ||| || || ||| |||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
20599940 |
tgaatcagggtttgttcgtgtggatcacgtttcaggtatggctatcagtatctctcatcttattgatgacatgtcttcttcttcaatgatatccttgagg |
20600039 |
T |
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| Q |
219 |
tatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattttgtgaatgtttatggttcattgtatg |
318 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20600040 |
tatactcttcctgagattcttactaatggttcatctcattctttgaatttgaaaattcagacattagggcattttgtgaatgtttatggttcattgtatg |
20600139 |
T |
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| Q |
319 |
atgatgt |
325 |
Q |
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||||||| |
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| T |
20600140 |
atgatgt |
20600146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 195 - 324
Target Start/End: Complemental strand, 47944862 - 47944733
Alignment:
| Q |
195 |
tcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattttg |
294 |
Q |
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||||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||| | ||| |||||||||||||| |||||| |||||| |
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| T |
47944862 |
tcttcatcaatgatatctttgaggtatactcttcctgagattcttaccaatggttcatctcatgctgtgatattgaaaattcagactttagggaattttg |
47944763 |
T |
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| Q |
295 |
tgaatgtttatggttcattgtatgatgatg |
324 |
Q |
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||||||| ||||||||||||| |||||||| |
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| T |
47944762 |
tgaatgtctatggttcattgtgtgatgatg |
47944733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 47945064 - 47944888
Alignment:
| Q |
26 |
acctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattcttgaatca |
125 |
Q |
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||||||||| ||||| ||||| ||| ||||||||||||||||| ||||| ||||| || || |||| ||||| ||||||||| ||||||||||||| |
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| T |
47945064 |
acctgatttcgtgaagagggttattaaggaagcgcttggtgatgatgttagtgatttgaagctgttggtgtttgcggttcatgctgttattcttgaatct |
47944965 |
T |
|
| Q |
126 |
gggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttattgatgacatgtcttcttcttc |
202 |
Q |
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|||||| |||||||||| ||||||||| || |||||||| |||| ||||| ||||||| |||||||||||||| |
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| T |
47944964 |
gggtttgttcgtgtggacgaggtttcgggtatggcgattagttgctctaatcttgttgatgatatgtcttcttcttc |
47944888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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