View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16467_high_1 (Length: 759)

Name: NF16467_high_1
Description: NF16467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16467_high_1
NF16467_high_1
[»] chr1 (3 HSPs)
chr1 (1-743)||(5160605-5161347)
chr1 (25-395)||(5158028-5158380)
chr1 (531-698)||(5157348-5157515)


Alignment Details
Target: chr1 (Bit Score: 675; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 1 - 743
Target Start/End: Complemental strand, 5161347 - 5160605
Alignment:
Q  1 tagaagagccgagaggagggacagacagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcactcaagttcctgtaaatcatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5161347 tagaagagccgagaggagggacagacagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcacttaagttcctgtaaatcatc 5161248  T
Q  101 ttcgggacaagggacaaaggaagcacgctgtgtatagaatcgaactggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgat 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161247 ttcgggacaaggtacaaaggaagcacgctgtgtatagaatcgaactggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgat 5161148  T
Q  201 cttccaaacaatgaagatgcattttcattctgtctaatcaaaaattatttaatattcctttctcagttaacatatatcaatctgttacaaacataaaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161147 cttccaaacaatgaagatgcattttcattctgtctaatc-aaaagtatttaatattcctttctcagttaacatatatcaatctgttacaaacataaaaca 5161049  T
Q  301 actgatcctaatctacactaccttaagaaatcagtgaattcaatctaaatcaaacagatttgttgcattcactacttcttgtatttttccaaattcaatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161048 actgatcctaatctacactaccttaagaaatcagtgaattcaatctaaatcaaacagatttgttgcattcactacttcttgtatttttccaaattcaatt 5160949  T
Q  401 agtcttaacaaattcattgcctataacctcaacccatctgccactgcatccac-nnnnnnnnnnngcacgacatatatgatgacagagtcaatttaatgg 499  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||    
T  5160948 agtcgtaacaaattcattgcctataacctcaacccatctgccactgcatccacaaaaaaaaaaaagcacgacatatatgatgacagagtcaatttaatgg 5160849  T
Q  500 cagcatgaattaagaattgcagaaaataaattggcgtctcgaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgctttgccat 599  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160848 cagcatgaattaagaattgcagaaaataaattggtgtctcgaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgctttgccat 5160749  T
Q  600 tccttttttatgtgcacgtacagctcatcctgctgcagatttctcaaactcctcttgcctgcaatcaacaaatacaagttaatcaacagttacataaatt 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160748 tccttttttatgtgcacgtacagctcatcctgctgcagatttctcaaactcctcttgcctgcaatcaacaaatacaagttaatcaacagttacataaatt 5160649  T
Q  700 ataaattatcatcagtttgtcattaatcagtaaaataacatcat 743  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5160648 ataaattatcatcagtttgtcattaatcagtaaaataacatcat 5160605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 25 - 395
Target Start/End: Complemental strand, 5158380 - 5158028
Alignment:
Q  25 acagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcactcaagttcctgtaaatcatcttcgggacaagggacaaaggaagc 124  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||       |||    
T  5158380 acagaatatttcattgtctagtataaaaacaaattgtacaaatgaaacaattgcactcaagttcctgtaaatcatcttcccgacaaggga-------agc 5158288  T
Q  125 acgctgtgtatagaatcgaactggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgatcttccaaacaatgaagatgcattt 224  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||            ||||||||||||    
T  5158287 acgctgtgtatagaatcggactggatctgtcattgatactgtaacacaagaaaagaaaccaatcaggcacatcgat------------gaagatgcattt 5158200  T
Q  225 tcattctgtctaatcaaaaattatttaatattcctttctcagttaacatatatcaatctgttacaaacataaaacaactgatcctaatctacactacctt 324  Q
     |||||||||  ||||||| | | || ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  5158199 gcattctgtcagatcaaaagt-acttgatattcctttctacgttaacacatatcaatctgttacaaacataaaacaactgatcattatctacactacctt 5158101  T
Q  325 aagaaatcagtgaattcaatctaaatcaaac-agatttgttgcattcactacttc-ttgtatttttccaaatt 395  Q
    ||||||||||||| |||| |||||||| |||  | ||||||| |||||||| ||| ||| |||||||||||||    
T  5158100 aagaaatcagtgagttcactctaaatccaactgggtttgttggattcactatttctttgcatttttccaaatt 5158028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 531 - 698
Target Start/End: Complemental strand, 5157515 - 5157348
Alignment:
Q  531 tggcgtctcgaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcct 630  Q
    |||| ||| ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  5157515 tggcatcttgaatcaccaaacctttagagttggttcgccgtgatttgcgtttgcagcttgctttgccattcctttttgatgtgcacgtgcagctcgtcct 5157416  T
Q  631 gctgcagatttctcaaactcctcttgcctgcaatcaacaaatacaagttaatcaacagttacataaat 698  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||    
T  5157415 gctgcagatttctcaaagtcctcttgtctgcaatcaacacatacaagttaatcaatagttacataaat 5157348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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