View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16467_high_4 (Length: 434)
Name: NF16467_high_4
Description: NF16467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16467_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Complemental strand, 37043414 - 37043015
Alignment:
| Q |
17 |
aatatgagctctaaatacttttcaaattatttattagtcttgtttgccgatgactaatctctaacgaaaaatttgactgatcacttttagtggcgtctct |
116 |
Q |
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| T |
37043414 |
aatatgagctctaaatacttttcaaattatttattagtcttgcttgccgatgactaatctctaacgaaaaatttgactgatcacttttaatggcgtctct |
37043315 |
T |
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| Q |
117 |
gcttccaaccatttttaaaattacattttatcgttgaaatttgatttaaaagtatatcattccatcctcttgcttctccaacattgggctcaaccataag |
216 |
Q |
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| T |
37043314 |
gcttccaaccatttttaaaattacattttatcgttgaaaattgatttaaaagtatatc-ttccatcctcttgcttctccaacattaggctcaaccataag |
37043216 |
T |
|
| Q |
217 |
caacatcactttaattatacacatgatgcaaagctaaagcactaccaggcagcagcacatgcatgctcttggatacacttttaatagtttttcattttat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37043215 |
caacatcactttaattatacacatgatgcaaagctaaagcactaccaggcagcagcacatgcatgctcttggatacacttttaatagtttttcattttat |
37043116 |
T |
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| Q |
317 |
gatacctaaagataatacaccaatatactttaattcatgcatactccatgaatgacattttaaaaataatgaagtaagatttaacctatcgttttcaaat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37043115 |
gatacctaaagataatacaccaatatactttaattcatgcatactccatgaatgacattttaaaaataatggagtaagatttaacctatcgttttcaaat |
37043016 |
T |
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