View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16467_low_2 (Length: 610)
Name: NF16467_low_2
Description: NF16467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16467_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 5161347 - 5160754
Alignment:
| Q |
1 |
tagaagagccgagaggagggacagacagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcactcaagttcctgtaaatcatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5161347 |
tagaagagccgagaggagggacagacagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcacttaagttcctgtaaatcatc |
5161248 |
T |
|
| Q |
101 |
ttcgggacaagggacaaaggaagcacgctgtgtatagaatcgaactggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161247 |
ttcgggacaaggtacaaaggaagcacgctgtgtatagaatcgaactggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgat |
5161148 |
T |
|
| Q |
201 |
cttccaaacaatgaagatgcattttcattctgtctaatcaaaaattatttaatattcctttctcagttaacatatatcaatctgttacaaacataaaaca |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161147 |
cttccaaacaatgaagatgcattttcattctgtctaatc-aaaagtatttaatattcctttctcagttaacatatatcaatctgttacaaacataaaaca |
5161049 |
T |
|
| Q |
301 |
actgatcctaatctacactaccttaagaaatcagtgaattcaatctaaatcaaacagatttgttgcattcactacttcttgtatttttccaaattcaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161048 |
actgatcctaatctacactaccttaagaaatcagtgaattcaatctaaatcaaacagatttgttgcattcactacttcttgtatttttccaaattcaatt |
5160949 |
T |
|
| Q |
401 |
agtcttaacaaattcattgcctataacctcaacccatctgccactgcatccac-nnnnnnnnnnngcacgacatatatgatgacagagtcaatttaatgg |
499 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5160948 |
agtcgtaacaaattcattgcctataacctcaacccatctgccactgcatccacaaaaaaaaaaaagcacgacatatatgatgacagagtcaatttaatgg |
5160849 |
T |
|
| Q |
500 |
cagcatgaattaagaattgcagaaaataaattggcgtctcgaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgcttt |
594 |
Q |
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| T |
5160848 |
cagcatgaattaagaattgcagaaaataaattggtgtctcgaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgcttt |
5160754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 25 - 395
Target Start/End: Complemental strand, 5158380 - 5158028
Alignment:
| Q |
25 |
acagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcactcaagttcctgtaaatcatcttcgggacaagggacaaaggaagc |
124 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
5158380 |
acagaatatttcattgtctagtataaaaacaaattgtacaaatgaaacaattgcactcaagttcctgtaaatcatcttcccgacaaggga-------agc |
5158288 |
T |
|
| Q |
125 |
acgctgtgtatagaatcgaactggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgatcttccaaacaatgaagatgcattt |
224 |
Q |
| |
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| T |
5158287 |
acgctgtgtatagaatcggactggatctgtcattgatactgtaacacaagaaaagaaaccaatcaggcacatcgat------------gaagatgcattt |
5158200 |
T |
|
| Q |
225 |
tcattctgtctaatcaaaaattatttaatattcctttctcagttaacatatatcaatctgttacaaacataaaacaactgatcctaatctacactacctt |
324 |
Q |
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||||||||| ||||||| | | || |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
5158199 |
gcattctgtcagatcaaaagt-acttgatattcctttctacgttaacacatatcaatctgttacaaacataaaacaactgatcattatctacactacctt |
5158101 |
T |
|
| Q |
325 |
aagaaatcagtgaattcaatctaaatcaaac-agatttgttgcattcactacttc-ttgtatttttccaaatt |
395 |
Q |
| |
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||||||||||||| |||| |||||||| ||| | ||||||| |||||||| ||| ||| ||||||||||||| |
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| T |
5158100 |
aagaaatcagtgagttcactctaaatccaactgggtttgttggattcactatttctttgcatttttccaaatt |
5158028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 594
Target Start/End: Complemental strand, 5157515 - 5157452
Alignment:
| Q |
531 |
tggcgtctcgaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgcttt |
594 |
Q |
| |
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|||| ||| ||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||| |
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| T |
5157515 |
tggcatcttgaatcaccaaacctttagagttggttcgccgtgatttgcgtttgcagcttgcttt |
5157452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 44995209 - 44995173
Alignment:
| Q |
313 |
ctacactaccttaagaaatcagtgaattcaatctaaa |
349 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||| |
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| T |
44995209 |
ctacactaccataagaaatcagtgaatttaatctaaa |
44995173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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