View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16467_low_3 (Length: 564)

Name: NF16467_low_3
Description: NF16467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16467_low_3
NF16467_low_3
[»] chr1 (16 HSPs)
chr1 (15-545)||(34910479-34911009)
chr1 (15-166)||(28542936-28543086)
chr1 (325-428)||(28542668-28542771)
chr1 (204-323)||(28542797-28542925)
chr1 (145-258)||(34905400-34905519)
chr1 (35-101)||(34905307-34905373)
chr1 (424-544)||(28542522-28542636)
chr1 (145-233)||(34896848-34896937)
chr1 (33-101)||(34896753-34896821)
chr1 (325-386)||(34897513-34897574)
chr1 (426-545)||(28544263-28544382)
chr1 (426-476)||(28544101-28544151)
chr1 (426-544)||(28545054-28545172)
chr1 (502-545)||(34897678-34897721)
chr1 (426-468)||(28544571-28544613)
chr1 (372-421)||(34897515-34897564)


Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 15 - 545
Target Start/End: Original strand, 34910479 - 34911009
Alignment:
Q  15 cacagacacacacacattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagctagaccagttggtt 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34910479 cacacacacacacacattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtacattcagagtaagcaaagctagaccagttggtt 34910578  T
Q  115 tgcaaatccttcgtaaaaacaaaatcttcctaaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactttaaaatattgt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34910579 tgcaaatccttcgtaaaaacaaaatcttcctaaaagcattagctaagcactacaaataatctatgtgtatgaaaactcgtatttcactttaaaatattgt 34910678  T
Q  215 gcttctcacacatcacatggtgctaccaataaactggtttcaaagaagacaatttactaagagcaagaaaattaataaaatggaaaaatatcaaaatttc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34910679 gcttctcacacatcacatggtgctaccaataaactggtttcaaagaagacaatttactaagagcaagaaaattaataaaatggaaaaatatcaaaatttc 34910778  T
Q  315 caatagaaagattacccaaaaccggagttgaagatggcccaaatgcaggcattgaactaccaaaagcaggagttgaagatgctccatatgcaggcattga 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34910779 caatagaaagattacccaaaaccggagttgaagatggcccaaatgcaggcattgaactaccaaaagcaggagttgaagatgctccatatgcaggcattga 34910878  T
Q  415 actaccaccgaaagagaagcgagacggcgtttgagctgcaccaaatacacctgtggaagtactccctgacgtggaattaaccgcaatcgatccaaatgga 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34910879 actaccaccgaaagagaagcgagacggcgtttgagctgcaccaaatacacctgtggaagtactccctgacgtagaattaaccgcaatcgatccaaatgga 34910978  T
Q  515 gttggactaccaaatggcttgggagcaaaag 545  Q
    |||||||||||||||||||||||||||||||    
T  34910979 gttggactaccaaatggcttgggagcaaaag 34911009  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 28543086 - 28542936
Alignment:
Q  15 cacagacacacacacattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagctagaccagttggtt 114  Q
    |||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| || || |||    
T  28543086 cacatacacacacccattaattcacatgaaaacttcattaaagaagaaataaaatacaataatagtaaattcaaagtaaccaaagctaga-caatttgtt 28542988  T
Q  115 tgcaaatccttcgtaaaaacaaaatcttcctaaaagcattagctaagcacta 166  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  28542987 tgcaaatccttcataaaaacaaaatcttcctaaaagcattagctaagtacta 28542936  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 325 - 428
Target Start/End: Complemental strand, 28542771 - 28542668
Alignment:
Q  325 attacccaaaaccggagttgaagatggcccaaatgcaggcattgaactaccaaaagcaggagttgaagatgctccatatgcaggcattgaactaccaccg 424  Q
    |||||||||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  28542771 attacccaaaaccggagttgaagatgccctgaatgcaggcgttgaactaccaaaagcaggagttgaagatgcgccaaatgcaggcaatgaactaccaccg 28542672  T
Q  425 aaag 428  Q
    ||||    
T  28542671 aaag 28542668  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 28542925 - 28542797
Alignment:
Q  204 taaaatattgtgcttctcacacatcacatggtgctaccaataaactggtttcaaag---------aagacaatttactaagagcaagaaaattaataaaa 294  Q
    |||| |||||||||||||||| ||||| |||  |||||||||||||||||||||||         |||||| ||| | |||||||||| |||||||||||    
T  28542925 taaactattgtgcttctcacaaatcacctggcactaccaataaactggtttcaaaggcttccatgaagacagtttgccaagagcaagacaattaataaaa 28542826  T
Q  295 tggaaaaatatcaaaatttccaatagaaa 323  Q
    ||| |||||||||||||||||||||||||    
T  28542825 tgggaaaatatcaaaatttccaatagaaa 28542797  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 258
Target Start/End: Original strand, 34905400 - 34905519
Alignment:
Q  145 taaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactt---taaaatattgtgcttctcacacatcacatggtgctacc 241  Q
    |||||| ||| |||||||||||||||  ||| |||||||||||||||  ||||||||||   ||||||||||||||||||||||||||||||   |||||    
T  34905400 taaaagaattggctaagcactacaaaatatccatgtgtatgaaaactgttatttcacttctttaaaatattgtgcttctcacacatcacatgacactacc 34905499  T
Q  242 ---aataaactggtttcaaa 258  Q
       |||||||||||||||||    
T  34905500 aataataaactggtttcaaa 34905519  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 34905307 - 34905373
Alignment:
Q  35 ttcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagct 101  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||    
T  34905307 ttcacatgaaatcttcattagagaagaaagaaaatacaataataataaattcagatttagcaaagct 34905373  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 424 - 544
Target Start/End: Complemental strand, 28542636 - 28542522
Alignment:
Q  424 gaaagagaagcgagacggcgtttgagctgcaccaaatacacctgtggaagtactccctgacgtggaattaaccgcaatcgatccaaatggagttggacta 523  Q
    |||||||||| ||||||| ||||||||||  ||||||||||||||||||||| ||||||     ||| || |||   |||||||||||||||||||||||    
T  28542636 gaaagagaagagagacggtgtttgagctgtgccaaatacacctgtggaagta-tccctg-----gaaatatccgttttcgatccaaatggagttggacta 28542543  T
Q  524 ccaaatggcttgggagcaaaa 544  Q
    |||||||||||  ||||||||    
T  28542542 ccaaatggcttatgagcaaaa 28542522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 34896848 - 34896937
Alignment:
Q  145 taaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactt-taaaatattgtgcttctcacacatcacatg 233  Q
    |||||||||| |||||||||||||||  ||| |||||||||||||||  |||||| ||| |  |||||||||||||||||||||||||||    
T  34896848 taaaagcattggctaagcactacaaaatatccatgtgtatgaaaactgttatttcgcttctttaatattgtgcttctcacacatcacatg 34896937  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 34896753 - 34896821
Alignment:
Q  33 aattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagct 101  Q
    |||||||||||||||||||||| | |||||||||||||  |||||| |||||||||| | |||||||||    
T  34896753 aattcacatgaaatcttcattagaaaagaaagaaaatatgataataataaattcagatttagcaaagct 34896821  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 34897513 - 34897574
Alignment:
Q  325 attacccaaaaccggagttgaagatggcccaaatgcaggcattgaactaccaaaagcaggag 386  Q
    |||||| ||| ||||||||||||||| ||||||||| ||||||||| |||||||||| ||||    
T  34897513 attaccaaaagccggagttgaagatgccccaaatgccggcattgaagtaccaaaagctggag 34897574  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 545
Target Start/End: Complemental strand, 28544382 - 28544263
Alignment:
Q  426 aagagaagcgagacggcgtttgagctgcaccaaatacacctgtggaagtactccctgacgtggaattaaccgcaatcgatccaaatggagttggactacc 525  Q
    |||||||| ||||||| ||||||||| | |||||||||||||||||||||| ||  ||| |||||||    |    | |||||||| |||||||||||||    
T  28544382 aagagaagggagacggtgtttgagcttcgccaaatacacctgtggaagtacccctagacatggaattgcatgtttccaatccaaatagagttggactacc 28544283  T
Q  526 aaatggcttgggagcaaaag 545  Q
    | | ||||| ||||||||||    
T  28544282 agaaggcttaggagcaaaag 28544263  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 28544151 - 28544101
Alignment:
Q  426 aagagaagcgagacggcgtttgagctgcaccaaatacacctgtggaagtac 476  Q
    |||||||| ||||||| ||||||||| | ||||||||||||||||||||||    
T  28544151 aagagaagggagacggtgtttgagcttcgccaaatacacctgtggaagtac 28544101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 544
Target Start/End: Complemental strand, 28545172 - 28545054
Alignment:
Q  426 aagagaagcgagacggcgtttgagctgcaccaaatacacctgtggaagtactccctgacgtggaattaaccgcaatcgatccaaatggagttggactacc 525  Q
    |||||||| ||||||| ||||||||||  ||||||||||| ||||  |||| ||  ||| |||||||| |||    |||| |||||||||||||||| ||    
T  28545172 aagagaagggagacggtgtttgagctgtgccaaatacacccgtggcggtacccctagacatggaattacccgtttccgatacaaatggagttggactgcc 28545073  T
Q  526 aaatggcttgggagcaaaa 544  Q
    |||||  || |||||||||    
T  28545072 aaatgatttaggagcaaaa 28545054  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 545
Target Start/End: Original strand, 34897678 - 34897721
Alignment:
Q  502 cgatccaaatggagttggactaccaaatggcttgggagcaaaag 545  Q
    ||||||||||||||||||||| ||||||||||| || |||||||    
T  34897678 cgatccaaatggagttggactcccaaatggcttaggtgcaaaag 34897721  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 468
Target Start/End: Complemental strand, 28544613 - 28544571
Alignment:
Q  426 aagagaagcgagacggcgtttgagctgcaccaaatacacctgt 468  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||    
T  28544613 aagagaagggagacggtgtttgagctgcgccaaatacacctgt 28544571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 421
Target Start/End: Original strand, 34897515 - 34897564
Alignment:
Q  372 taccaaaagcaggagttgaagatgctccatatgcaggcattgaactacca 421  Q
    |||||||||| |||||||||||||| ||| |||| ||||||||| |||||    
T  34897515 taccaaaagccggagttgaagatgccccaaatgccggcattgaagtacca 34897564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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