View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16467_low_5 (Length: 417)
Name: NF16467_low_5
Description: NF16467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16467_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 178 - 417
Target Start/End: Original strand, 7951055 - 7951294
Alignment:
| Q |
178 |
ttgtaagaagaaatgcacgaagttgttgaacaatggtgattttcaggtctcttaaatcaatcctcacaaactcaaacaccatagctagaaccttcctcac |
277 |
Q |
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| T |
7951055 |
ttgtaagaagaaatgctcgaagttgttgaacaatggtgattttcaggtctcttaaatcaatcctcacaaactcaaacaccatagctagaaccttcctcac |
7951154 |
T |
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| Q |
278 |
accaacaacctcaacaacaatcactcttcccttttctccattactccacaacgcgctttttctccttccttctcatcgcaacggcccccttttcctcgct |
377 |
Q |
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| T |
7951155 |
accaacaacctcaacaacaatcactcttcccttttctccattactccacaacgcgctttttctctttccttctcatcacagcggcccccttttcctcgct |
7951254 |
T |
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| Q |
378 |
tctccgccttggaagctttctcaatccgctacccctcttt |
417 |
Q |
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| T |
7951255 |
tctccgccttggaagctttctcaatccgctacccctcttt |
7951294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7950880 - 7950945
Alignment:
| Q |
1 |
atatatttatatcatatcaatccattgtagtcaaaataataatattatacccatccatctttatct |
66 |
Q |
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| T |
7950880 |
atatatttatatcatatcaatccattgtagtcaaaataataatattatacacatccatctttatct |
7950945 |
T |
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