View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16467_low_6 (Length: 337)
Name: NF16467_low_6
Description: NF16467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16467_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 25 - 320
Target Start/End: Complemental strand, 34327472 - 34327177
Alignment:
| Q |
25 |
aagattgaagttaattaatcaagggtcttccttatttatggtcacaattgattaattgtttcgttaannnnnnnnnnnnnnnnatgtaaatgtattaaga |
124 |
Q |
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| T |
34327472 |
aagattgaagttaattaagcaagggtcttccttatttatggtcacaaccgattaattgtttcgtttaattttttgttttttttatgtaaatgtattaaga |
34327373 |
T |
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| Q |
125 |
gaatgagatcattataaagtttgatgaattgctggaattttttcgggctctttatgaagattatgaggatgatgagggctatgttggttaatttgtttat |
224 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34327372 |
gaatgagataattataaagtttgatgaattgctggaattttttcggactttttatgaaggttatgaggatgatgagggctatgttggttaatttgtttat |
34327273 |
T |
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| Q |
225 |
gttggttgtgttttatggaattctttgattgatttatattctgttaaataagaactgggttgttgttttgtgttgatgttattgatgtggaagtgg |
320 |
Q |
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| T |
34327272 |
gttggttgtgttttatggaattctttgattgatttatattctgttaaacgagaactgagttgttgttttgtgttgatgttattgatgtggaagtgg |
34327177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 25 - 319
Target Start/End: Complemental strand, 40724002 - 40723706
Alignment:
| Q |
25 |
aagattgaagttaattaatcaagggtcttccttatttatggtcacaattgattaattgtttcgttaannnnnnnnnnnnnnnn--atgtaaatgtattaa |
122 |
Q |
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| T |
40724002 |
aagattgaagttacttaagctagggtcttccttatttatggtcacaatcgattaattgtttcgttaatttttggtttttttttttatgtaaatgtattaa |
40723903 |
T |
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| Q |
123 |
gagaatgagatcattataaagtttgatgaattgctggaattttttcgggctctttatgaagattatgaggatgatgagggctatgttggttaatttgttt |
222 |
Q |
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| T |
40723902 |
gagaatgagataattataaagtttgatgaattgctgaaattttttcgagctttttatgaagattatgaggatgatgagggttatgttggttaatttgttt |
40723803 |
T |
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| Q |
223 |
atgttggttgtgttttatggaattctttgattgatttatattctgttaaataagaactgggttgttgttttgtgttgatgttattgatgtggaagtg |
319 |
Q |
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| T |
40723802 |
atgttggttgtgttttatggaattctttgattgatttatattctgttaaatgagagttgggttgttgttttgtgttgatgttattgatgtggaagtg |
40723706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 47487248 - 47487182
Alignment:
| Q |
25 |
aagattgaagttaattaatcaagggtcttccttatttatggtcacaattgattaattgtttcgttaa |
91 |
Q |
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| T |
47487248 |
aagattgaagttaattaagcaagggacttccttgtttatggtgataatcgattggttgttttgttaa |
47487182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 319
Target Start/End: Original strand, 48096374 - 48096674
Alignment:
| Q |
25 |
aagattgaagttaattaatcaagggtcttccttatttatggtcacaattgattaattgtttcgttaannnnnnnnnnnnnnnn---atgtaaatg---ta |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| || |
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| T |
48096374 |
aagattgaagttaattaagcaagggtcttccttatttatggtcaaaatcgattaattgtttcgttaatttttggttttttttttttatgtaaatgatgta |
48096473 |
T |
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| Q |
119 |
ttaagagaatgagatcattataaagtttgatgaattgctggaattttttcgggctctttatgaagattatgaggatgatgagggctatgttggttaattt |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48096474 |
ttaagagaatgagataattataaagtttgatgaattgctgaaattttttcgggctttttatgaagattatgaggatgatgagggttatgttggttaattt |
48096573 |
T |
|
| Q |
219 |
gtttatgttggttgtgttttatggaattctttgattgatttatattctgttaaataagaactgggttgttgttttgtgttgatgttattgatgtggaagt |
318 |
Q |
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| T |
48096574 |
gtttatgttggttgtgttttatggaattctttgattgatttatattctgttaaatgagagttgggttgttgttttgtgttgatgttattgatgtggaagt |
48096673 |
T |
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| Q |
319 |
g |
319 |
Q |
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| T |
48096674 |
g |
48096674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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