View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16468_high_10 (Length: 467)
Name: NF16468_high_10
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 8556836 - 8556393
Alignment:
| Q |
7 |
gcagcacagatgataaaaggttgcagaggttatggctactacacaacttgaaacaaaagaaacaaaaatagtagatgagaaagtaagttacctgaacata |
106 |
Q |
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| T |
8556836 |
gcagctcagatgataaaaggttgcagagtttatggctactaagcaacttgaaacaaaagaaacaaaaatagtagatgagaaagtaagttacctgaacata |
8556737 |
T |
|
| Q |
107 |
aaggacgctttgaggttgaagaccagtattatggaagtaaaagtagtgattaacacctcttttgaaaggagtgctataacgaggatgatcaaacaccttt |
206 |
Q |
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| T |
8556736 |
aaggacgctttgaggttgaagaccagtattgtggaagtaaaagtagtgattaacacctcttttgaaaggagtggtataacgaggatgatcaaacaccttt |
8556637 |
T |
|
| Q |
207 |
ttgattgtttcaccaagtttggttctacaatcacatgtcttcagcactgaatcagtcaacacaacctgtttctgtacaaagtctttgacttcttcagcat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8556636 |
ttgattgtttcaccaagtttggttctacaatcacatgtcttcagcactgaatcagtcaaaacaacctgtttctgtacaaagtctttgacttcttcagcat |
8556537 |
T |
|
| Q |
307 |
caggattttcaagccaacggtaagggtcgggaacattaacgccgtgatagttgtcaatgacggagtcgtttctgcgagcaatgggatattggatggtttc |
406 |
Q |
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| T |
8556536 |
caggattttcaagccaacggtaagggtcgggaacattaacgccgtgatagttgtcaatgacggagtcgtttctgcgagcaatgggatattggatggtttc |
8556437 |
T |
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| Q |
407 |
atcaaacacagaaagtgaacccatttttcttctatagctgttat |
450 |
Q |
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| T |
8556436 |
atcaaacacagaaagtgaacccatttttcttctatagctgttat |
8556393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 98 - 321
Target Start/End: Complemental strand, 8552397 - 8552188
Alignment:
| Q |
98 |
ctgaacataaaggacgctttgaggttgaagaccagtattatggaagtaaaagtagtgattaacacctcttttgaaaggagtgctataacgaggatgatca |
197 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||||||||||| |
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| T |
8552397 |
ctgaacataaaggacactttgaggttgaagaccagtatta--------------gtgattagcacctcttttgaaaggagcggtataacgaggatgatca |
8552312 |
T |
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| Q |
198 |
aacacctttttgattgtttcaccaagtttggttctacaatcacatgtcttcagcactgaatcagtcaacacaacctgtttctgtacaaagtctttgactt |
297 |
Q |
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|||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || || || |||||||||| |
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| T |
8552311 |
aacaactttttgatagtttcaccaagtttggctctacaatcacatgtcttcaatactgaatctgtcaacacaacctgtttttgcacgaactctttgactt |
8552212 |
T |
|
| Q |
298 |
cttcagcatcaggattttcaagcc |
321 |
Q |
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|||| || |||||||||||||||| |
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| T |
8552211 |
cttctgcgtcaggattttcaagcc |
8552188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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