View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16468_high_12 (Length: 451)

Name: NF16468_high_12
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16468_high_12
NF16468_high_12
[»] chr2 (6 HSPs)
chr2 (199-451)||(13447972-13448224)
chr2 (20-140)||(13447794-13447913)
chr2 (206-451)||(13454468-13454695)
chr2 (309-442)||(13439919-13440052)
chr2 (201-309)||(13439829-13439937)
chr2 (56-139)||(13454315-13454399)
[»] chr5 (2 HSPs)
chr5 (310-451)||(28385054-28385195)
chr5 (318-451)||(12540413-12540546)
[»] chr4 (4 HSPs)
chr4 (310-450)||(48961011-48961151)
chr4 (311-451)||(48965050-48965190)
chr4 (310-438)||(48967178-48967306)
chr4 (368-451)||(48912663-48912746)
[»] chr8 (1 HSPs)
chr8 (309-451)||(12641799-12641941)
[»] chr7 (1 HSPs)
chr7 (321-451)||(3417845-3417975)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 199 - 451
Target Start/End: Original strand, 13447972 - 13448224
Alignment:
Q  199 cattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447972 cattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctc 13448071  T
Q  299 aatcttttaaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13448072 aatcttttaaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagccaccttcttgaatagcttgtatagctttttctc 13448171  T
Q  399 caaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatc 451  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13448172 caaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatc 13448224  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 13447794 - 13447913
Alignment:
Q  20 gtacacaccaaaaattgaatcaaaacaattaagtttaaactattcgaaaattcatgttaaatctgccagagtagctaaatgttacttcattgatttgaga 119  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447794 gtacacaccaaaaattgaatcaaaacaattaagga-aaactattcgaaaattcatgttaaatctgccagagtagctaaatgttacttcattgatttgaga 13447892  T
Q  120 gtacttgtggcaggtattgtg 140  Q
    |||||||||||||||||||||    
T  13447893 gtacttgtggcaggtattgtg 13447913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 206 - 451
Target Start/End: Original strand, 13454468 - 13454695
Alignment:
Q  206 acttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttt 305  Q
    ||||| |||||||||||| || |||||||||| |||||||||||||| ||| ||||| ||| |||||||||||||| | ||||||||| |||||||||      
T  13454468 acttctgcttgacgaaacaacaatgttattagaaaaagttgaaaaaacttacacaatgctcctttgaattaatcatgcggcttgaggtttctcaatct-- 13454565  T
Q  306 taaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactc 405  Q
                    ||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||| ||||||||||||||    
T  13454566 ----------------tttaagttcatcaatcaaagccaacaaattattataagatgagccacctttttgaatagcttgtgtagccttttctccaaactc 13454649  T
Q  406 tcgagcatgtagcctgatattttcagcttcatcaccaccgtccatc 451  Q
    ||||||| ||| ||||||||||| |||||||||||||||| |||||    
T  13454650 tcgagcacgtaccctgatatttttagcttcatcaccaccgcccatc 13454695  T

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Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 309 - 442
Target Start/End: Original strand, 13439919 - 13440052
Alignment:
Q  309 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 408  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |    
T  13439919 ggtctctcaatcttttaagttcttcaattaaagccaacaaattattataagacgagccaccttcttgaatagcttgtgtagccttttctccaaactcttg 13440018  T
Q  409 agcatgtagcctgatattttcagcttcatcacca 442  Q
    |||| ||||||| ||||||| |||||||||||||    
T  13440019 agcaagtagcctcatatttttagcttcatcacca 13440052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 13439829 - 13439937
Alignment:
Q  201 ttcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaa 300  Q
    |||||||||| |||||||||| | || || ||||||||| | ||||||||||  ||||||||| || ||||||||||||||   ||||| ||||||||||    
T  13439829 ttcacacttctgcttgacgaaccaacaatattattaggataggttgaaaaaacatagacaatagtcctttgaattaatcatgtcgcttggggtctctcaa 13439928  T
Q  301 tcttttaag 309  Q
    |||||||||    
T  13439929 tcttttaag 13439937  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 13454315 - 13454399
Alignment:
Q  56 aaactattcgaaaattcatgttaaatctgccagagtagctaaat-gttacttcattgatttgagagtacttgtggcaggtattgt 139  Q
    ||||||||| ||||||||| ||||||||||||  ||||||| || ||| |||||||||||||||||||||||| |||| ||||||    
T  13454315 aaactattcaaaaattcatattaaatctgccatggtagctatattgttgcttcattgatttgagagtacttgtcgcagatattgt 13454399  T

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Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 310 - 451
Target Start/End: Original strand, 28385054 - 28385195
Alignment:
Q  310 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 409  Q
    ||||||| |||||||||||||||| || ||||| ||||||||||||||||| || || ||||||| || |||| || |||| || ||||| |||||||||    
T  28385054 gtctctcaatcttttaagttcgtcgattaaagctaacaaattattataagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcga 28385153  T
Q  410 gcatgtagcctgatattttcagcttcatcaccaccgtccatc 451  Q
    ||| || | || ||||||||||||||||| ||||||||||||    
T  28385154 gcacgttgtctcatattttcagcttcatcgccaccgtccatc 28385195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 318 - 451
Target Start/End: Original strand, 12540413 - 12540546
Alignment:
Q  318 atcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtag 417  Q
    ||||||||| |||||| |||||||  ||||||||||||| ||| || || |||||||||| |||| || |||| || ||||||| |||||| ||| ||||    
T  12540413 atcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtag 12540512  T
Q  418 cctgatattttcagcttcatcaccaccgtccatc 451  Q
     || |||||||||||||||| |||||| ||||||    
T  12540513 tctcatattttcagcttcataaccaccatccatc 12540546  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 310 - 450
Target Start/End: Original strand, 48961011 - 48961151
Alignment:
Q  310 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 409  Q
    ||||||| |||||||||| || ||||| ||||||||||||||||||| ||| ||||| ||| |||||| ||||  |||||| || || ||||||||||||    
T  48961011 gtctctcaatcttttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcga 48961110  T
Q  410 gcatgtagcctgatattttcagcttcatcaccaccgtccat 450  Q
    ||| |  | || |||| ||| ||||||||||||||||||||    
T  48961111 gcacgccgtcttatatcttcggcttcatcaccaccgtccat 48961151  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 451
Target Start/End: Original strand, 48965050 - 48965190
Alignment:
Q  311 tctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgag 410  Q
    |||||| ||||||| || || |||||||| || |||||||| |||| ||||||||| ||||||||||| ||| || |||| ||||||||||||||| |||    
T  48965050 tctctcaatcttttgagatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgtctagccttttctccaaactcttgag 48965149  T
Q  411 catgtagcctgatattttcagcttcatcaccaccgtccatc 451  Q
    || |    || || || |||||||||||||||| |||||||    
T  48965150 cacgacttctaattttctcagcttcatcaccactgtccatc 48965190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 438
Target Start/End: Original strand, 48967178 - 48967306
Alignment:
Q  310 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 409  Q
    |||||||  ||||||||| || ||||||||||| |  ||||||||||||||| |||| ||||||||||  ||| || |||| ||||||||||| ||||||    
T  48967178 gtctctcattcttttaagatcatcaatcaaagcaagtaaattattataagacaagccaccttcttgaagtgctcgtgtagccttttctccaaagtctcga 48967277  T
Q  410 gcatgtagcctgatattttcagcttcatc 438  Q
    ||| || | ||||| || |||||||||||    
T  48967278 gcacgttgtctgatcttctcagcttcatc 48967306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 451
Target Start/End: Complemental strand, 48912746 - 48912663
Alignment:
Q  368 ccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatc 451  Q
    ||||||| ||| || ||| ||||||| || |||||||||||||||||| | ||||| || |||||||||||||||| |||||||    
T  48912746 ccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatc 48912663  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 451
Target Start/End: Complemental strand, 12641941 - 12641799
Alignment:
Q  309 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 408  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||| |||||| || ||||||| || ||| ||| |||| ||||  ||||||||| |    
T  12641941 ggtctctcgatcttttaagatcgttaatcaaagccaacaaattgttatgagacgacccgccttcttcaacagcatgtgtagcctttttcccaaactcttg 12641842  T
Q  409 agcatgtagcctgatattttcagcttcatcaccaccgtccatc 451  Q
    |||| || | ||||| |  | ||||||||||||| ||||||||    
T  12641841 agcacgttgtctgatttccttagcttcatcaccatcgtccatc 12641799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 451
Target Start/End: Complemental strand, 3417975 - 3417845
Alignment:
Q  321 ttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcct 420  Q
    ||||||||||||| |||||||  |||||||||| ||  || || || ||||||||||||||| || |||| || ||||||| |||||||||| |||| ||    
T  3417975 ttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtct 3417876  T
Q  421 gatattttcagcttcatcaccaccgtccatc 451  Q
     |||  |||||| ||||||| || |||||||    
T  3417875 cataccttcagcctcatcactactgtccatc 3417845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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