View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16468_high_20 (Length: 266)
Name: NF16468_high_20
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 33040513 - 33040742
Alignment:
| Q |
22 |
cggttattcaacgtcaggaggtaatgtgtcttcttctccttcatctgatctgatcaaataaggttaccctgttttaatgataaaaccagacatgtagttt |
121 |
Q |
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| T |
33040513 |
cggttattcaacgtcaggaggtaatgtgtcttattctccttcatctgatctgatcaaataagtttaccctgttttaatgataaaaccagacatgtagttt |
33040612 |
T |
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| Q |
122 |
ttccggccaatcaagaccactctatagttgatctcgattgtgcccttattgattcaactttaccaacattaacacttttcttatccatgaggtattaaac |
221 |
Q |
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| T |
33040613 |
tttcggcca-----gaccactctatagttgatctcgattgtgcccttattgattcaactttaccaacattaacacttttcttatccatgaggtattaaac |
33040707 |
T |
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| Q |
222 |
cgtgtgatttgttctgtaatctaaccctgtttcat |
256 |
Q |
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| T |
33040708 |
cgtgtgatttgttctgtaatctaaccctgtttcat |
33040742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 20299959 - 20300099
Alignment:
| Q |
23 |
ggttattcaacgtcaggaggtaatgtgtcttcttctccttcatctgatctgatcaaataaggttaccctgttttaatgataaaaccagacatgtagtttt |
122 |
Q |
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| T |
20299959 |
ggttattcaacgtcaagaggtaatatgtcttcttctccttcatttgatctaatcaaataagtttatcatgtgttaaggataaaactagacgtgtagtttt |
20300058 |
T |
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| Q |
123 |
tccggccaatcaagaccactctatagttgatctcgattgtg |
163 |
Q |
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| T |
20300059 |
tctggccaatcaagaccactttatagttgatcacgattgtg |
20300099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 20300170 - 20300108
Alignment:
| Q |
133 |
caagaccactctatagttgatctcgattgtgcccttattgattcaactttaccaacattaaca |
195 |
Q |
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| T |
20300170 |
caagaccactctatagttgatctcgattgtgcccttattgattcaactttaccaacattaaca |
20300108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 20300515 - 20300552
Alignment:
| Q |
151 |
gatctcgattgtgcccttattgattcaactttaccaac |
188 |
Q |
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| T |
20300515 |
gatcttgattgtgcctttattgattcaactttaccaac |
20300552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 20324630 - 20324593
Alignment:
| Q |
151 |
gatctcgattgtgcccttattgattcaactttaccaac |
188 |
Q |
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| T |
20324630 |
gatcttgattgtgcctttattgattcaactttaccaac |
20324593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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