View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16468_high_21 (Length: 265)
Name: NF16468_high_21
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 43712402 - 43712639
Alignment:
| Q |
13 |
agcagagacatcttcatccaaatcaactttcaccttaaacgaaggttgccgctgccgtttcgaagtccacatccgctacagtttaacgacgtcgttcttc |
112 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||||||| |
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| T |
43712402 |
agcagaaacatcttcatccgaatcaactttcaccttaaacgaaggttgctgctgccgtttcgaagtccacatccgctaaagtttaactacttcgttcttc |
43712501 |
T |
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| Q |
113 |
tgttcttcgttatgggaatcgcgatgatgattatgcttttggcgtgtgtaaacgaagtaaccgtttatctgaatcttactcttgaatgtatcggtttaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43712502 |
agttcttcgttatgggaatcgcgatgatgattatgctttcggcgtgtgtaaacgaagtaaccgtttatctgaatcttactcttgaatgtgtcggtttaca |
43712601 |
T |
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| Q |
213 |
tggaggaggttaatctgaagaagagggggtgaattatt |
250 |
Q |
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| T |
43712602 |
tggaggaggttaatctgaagaagagggggtgaattatt |
43712639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 26272459 - 26272222
Alignment:
| Q |
13 |
agcagagacatcttcatccaaatcaactttcaccttaaacgaaggttgccgctgccgtttcgaagtccacatccgctacagtttaacgacgtcgttcttc |
112 |
Q |
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|||||| |||||||||||| |||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26272459 |
agcagaaacatcttcatccgaatcaactttcaccttaaacaaaggatgccgttgtcgtttcgaagtccacatccgctagagtttaacgacgtcgttctta |
26272360 |
T |
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| Q |
113 |
tgttcttcgttatgggaatcgcgatgatgattatgcttttggcgtgtgtaaacgaagtaaccgtttatctgaatcttactcttgaatgtatcggtttaca |
212 |
Q |
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| T |
26272359 |
tgttcttcgttctcgaaatcgcgatgatgattatgctttcggcgtgtgtaaacgaagtaaccatttatctgaatcttattcttgaatgtgtcagtttaca |
26272260 |
T |
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| Q |
213 |
tggaggaggttaatctgaagaagagggggtgaattatt |
250 |
Q |
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| T |
26272259 |
tggaggaggttaatctgaagaagagggggtgaattatt |
26272222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 108 - 250
Target Start/End: Complemental strand, 27196249 - 27196107
Alignment:
| Q |
108 |
tcttctgttcttcgttatgggaatcgcgatgatgattatgcttttggcgtgtgtaaacgaagtaaccgtttatctgaatcttactcttgaatgtatcggt |
207 |
Q |
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||||| |||||||||||| | ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
27196249 |
tcttcggttcttcgttatcgaaatcgcggtgatgattacgctttctgcgtgtgtaaacgaagtaaccgtttatctgaatcttactcttgcatgtgtcggt |
27196150 |
T |
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| Q |
208 |
ttacatggaggaggttaatctgaagaagagggggtgaattatt |
250 |
Q |
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| T |
27196149 |
ttccatgggggaggtgaatctgaagaagagggggtgaattatt |
27196107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 27196361 - 27196300
Alignment:
| Q |
20 |
acatcttcatccaaatcaactttcaccttaaacgaaggttgccgctgccgtttcgaagtcca |
81 |
Q |
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||||||||| | |||||||||||||||||||||| || |||| ||||||||||||||||| |
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| T |
27196361 |
acatcttcacctgaatcaactttcaccttaaacgacggccgccgttgccgtttcgaagtcca |
27196300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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