View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16468_high_22 (Length: 255)

Name: NF16468_high_22
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16468_high_22
NF16468_high_22
[»] chr6 (4 HSPs)
chr6 (17-160)||(9664637-9664780)
chr6 (19-167)||(3074933-3075084)
chr6 (19-165)||(787291-787437)
chr6 (42-150)||(21146834-21146941)
[»] chr4 (3 HSPs)
chr4 (19-165)||(55849419-55849566)
chr4 (166-241)||(40275613-40275688)
chr4 (32-118)||(55852052-55852138)
[»] chr3 (9 HSPs)
chr3 (30-165)||(27462142-27462277)
chr3 (31-154)||(20868712-20868836)
chr3 (19-150)||(24595229-24595360)
chr3 (31-116)||(20871350-20871436)
chr3 (33-150)||(51308829-51308946)
chr3 (113-165)||(27462292-27462344)
chr3 (30-70)||(35610832-35610872)
chr3 (30-111)||(447126-447205)
chr3 (17-150)||(51306352-51306484)
[»] chr1 (3 HSPs)
chr1 (19-141)||(20225515-20225637)
chr1 (45-165)||(20226820-20226942)
chr1 (24-61)||(20226953-20226990)
[»] chr8 (11 HSPs)
chr8 (24-154)||(35416100-35416230)
chr8 (31-154)||(12062802-12062926)
chr8 (30-151)||(31909113-31909232)
chr8 (30-119)||(369298-369387)
chr8 (33-153)||(3785802-3785920)
chr8 (75-154)||(3788511-3788591)
chr8 (86-154)||(19472494-19472563)
chr8 (86-154)||(19543419-19543488)
chr8 (86-154)||(19589208-19589277)
chr8 (30-66)||(4676165-4676201)
chr8 (30-66)||(4678110-4678146)
[»] chr5 (3 HSPs)
chr5 (30-136)||(27172855-27172960)
chr5 (35-154)||(18587374-18587499)
chr5 (30-66)||(39040636-39040672)
[»] chr2 (1 HSPs)
chr2 (34-168)||(26608005-26608138)
[»] chr7 (1 HSPs)
chr7 (33-154)||(2577018-2577137)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 9664780 - 9664637
Alignment:
Q  17 aattagaacactggtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataata 116  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||    
T  9664780 aattaggacactagtttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaata 9664681  T
Q  117 gtttttcaagcttttctctctatatccatggatgccatctttac 160  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  9664680 gtttttcaagcttttctctctatatccatggatgccatgtttac 9664637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 3074933 - 3075084
Alignment:
Q  19 ttagaacactggtttagttactatata--agtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatc-aatataat 115  Q
    |||| ||||| ||||||||||||||||  | ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||    
T  3074933 ttaggacactagtttagttactatatataaatcacatggttgtctcatttgtatctatcttttccattcttatatcatttcaactatcatcaaatacaat 3075032  T
Q  116 agtttttcaagcttttctctctatatccatggatgccatctttactaacaat 167  Q
    |||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  3075033 agttttccaagcttttctctctatatccatggatgccatgttttctaacaat 3075084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 787291 - 787437
Alignment:
Q  19 ttagaacactggtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagt 118  Q
    |||| ||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||| ||||||    
T  787291 ttaggacactagtttagttactatataagtcatatgattgactcatttgtaccgatctttctcattcttgtatcatttcaagtatcatcaatacaatagt 787390  T
Q  119 ttttcaagcttttctctctatatccatggatgccatctttactaaca 165  Q
    ||| ||| |||||||||||||||| ||||||| ||| ||| ||||||    
T  787391 tttccaaacttttctctctatatctatggatgacatgtttcctaaca 787437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 21146941 - 21146834
Alignment:
Q  42 tataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaag-cttttctctctata 140  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||  |||||| |||| ||||  |||  ||||||||||||     
T  21146941 tataagtcacatg-ttgactcatttgtacctctcttttc-attcttgtatcatttcaactattttcaatacaataattttctaagttttttctctctatt 21146844  T
Q  141 tccatggatg 150  Q
    | ||||||||    
T  21146843 ttcatggatg 21146834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 55849566 - 55849419
Alignment:
Q  19 ttagaacactggtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagt 118  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55849566 ttaggacactagttcagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatacaatagt 55849467  T
Q  119 ttt-tcaagcttttctctctatatccatggatgccatctttactaaca 165  Q
    |||  |||||||||||||||||||||||||||||||| ||| ||||||    
T  55849466 tttcccaagcttttctctctatatccatggatgccatgtttcctaaca 55849419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 40275688 - 40275613
Alignment:
Q  166 attactttcatttttattgtctcaacttgtggctatgctaaaaatttcaaaataaaataatccatgtctgatttcc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40275688 attactttcatttttattgtctcaacttgtggctatgctaaaaatttcaaaataaaataatccatgtctgatttcc 40275613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 55852138 - 55852052
Alignment:
Q  32 ttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagt 118  Q
    ||||||||||||||| | ||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  55852138 ttagttactatataactaacatggttgactcatttgtagttatcttttacattcttgtatcatttcaactatcatcaatacaatagt 55852052  T

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Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 27462142 - 27462277
Alignment:
Q  30 gtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagctt 129  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  27462142 gtttagttactatataagtcatatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagttttccaagctt 27462241  T
Q  130 ttctctctatatccatggatgccatctttactaaca 165  Q
    ||||||||||||||||||||||||| ||||||||||    
T  27462242 ttctctctatatccatggatgccatgtttactaaca 27462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 20868712 - 20868836
Alignment:
Q  31 tttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcat-ttcaactatcatcaatataatagtttttcaagctt 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||  ||||||    
T  20868712 tttagttactatataagtcacatggttgacttatttgtacctatctttttcattcttgtattatgttcaactatcatcaatacaatagttttctaagctt 20868811  T
Q  130 ttctctctatatccatggatgccat 154  Q
    |||||||| | | ||||||||||||    
T  20868812 ttctctctcttttcatggatgccat 20868836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 24595229 - 24595360
Alignment:
Q  19 ttagaacactggtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatca-tttcaactatcatcaatataatag 117  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||| |||||||||||||||||| |||||    
T  24595229 ttaggacactagtttagttactatataagtcacatggttgactcatttgtactaatctttttcattcttgtatcattttcaactatcatcaatacaatag 24595328  T
Q  118 tttttcaagcttttctctctatatccatggatg 150  Q
    ||| | |||||||||||||||| | ||||||||    
T  24595329 tttct-aagcttttctctctatcttcatggatg 24595360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 20871350 - 20871436
Alignment:
Q  31 tttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatca-tttcaactatcatcaatataata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||    
T  20871350 tttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtattattttcaactatcatcaatacaata 20871436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 51308829 - 51308946
Alignment:
Q  33 tagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagc-tttt 131  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||  |||||||||||||||||||||| ||||||| |||| ||| | |||| ||||    
T  51308829 tagttactatataagtcacatggttgactcatttgtactaatctcttttattcttgtatcatttcaactattatcaatacaataatttat-aagcttttt 51308927  T
Q  132 ctctctatatccatggatg 150  Q
    |||||||| | ||||||||    
T  51308928 ctctctattttcatggatg 51308946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 27462292 - 27462344
Alignment:
Q  113 aatagtttttcaagcttttctctctatatccatggatgccatctttactaaca 165  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  27462292 aatagttttccaagcttttctctctatatccatggatgccatgtttactaaca 27462344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 35610832 - 35610872
Alignment:
Q  30 gtttagttactatataagtcacatggttgactcatttgtac 70  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  35610832 gtttagttactatataagtcacaaggttgactcatttgtac 35610872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 447205 - 447126
Alignment:
Q  30 gtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaata 111  Q
    |||||| ||||||| ||||||||  |||||||||||||||||| |||||  |||| || |||||||||||||| ||| ||||    
T  447205 gtttagatactatagaagtcacaaagttgactcatttgtacctctcttt--catttttctatcatttcaactaccataaata 447126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 51306352 - 51306484
Alignment:
Q  17 aattagaacactggtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataata 116  Q
    |||||| ||||| || |||||||||||||| | | ||||||||||||||  |||  |||| ||  ||| ||||||||||| |||||| ||||||| ||||    
T  51306352 aattaggacactagtgtagttactatataacttatatggttgactcatta-tactaatctcttttatttttgtatcattttaactattatcaatacaata 51306450  T
Q  117 gtttttcaagc-ttttctctctatatccatggatg 150  Q
     ||| | |||| |||||||||||| | ||||||||    
T  51306451 atttct-aagctttttctctctattttcatggatg 51306484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 20225637 - 20225515
Alignment:
Q  19 ttagaacactggtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagt 118  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  20225637 ttaggacactagtttagttactatataagtcacatggttgactcttttgtacctatcttttccattcttgtatcatttcaattatcatcaatacaatagt 20225538  T
Q  119 ttttcaagcttttctctctatat 141  Q
    ||| |||||||||||||||||||    
T  20225537 tttgcaagcttttctctctatat 20225515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 45 - 165
Target Start/End: Complemental strand, 20226942 - 20226820
Alignment:
Q  45 aagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagcttttct--ctctatatc 142  Q
    |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||  |||||||||    
T  20226942 aagttacatggttgactcttttgtacctatctttttcattcttgtatcatttcaattatcatcaatacaatagtttttcaaacttttctctctctatatc 20226843  T
Q  143 catggatgccatctttactaaca 165  Q
    |||| ||||| | ||| ||||||    
T  20226842 catgaatgccgtgtttcctaaca 20226820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 20226990 - 20226953
Alignment:
Q  24 acactggtttagttactatataagtcacatggttgact 61  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  20226990 acactagtttagttactatataagtcatatggttgact 20226953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 35416230 - 35416100
Alignment:
Q  24 acactggtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttc 123  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||| ||| |||| |||||||||||    
T  35416230 acactagtttagtgactatataagtcacatggttgactcatttgtacttatcttcttcattattgtatcatttcaactaccattaatacaatagtttttc 35416131  T
Q  124 aagcttttctctctatatccatggatgccat 154  Q
    |||||||||||||||| |  |||||||||||    
T  35416130 aagcttttctctctatttttatggatgccat 35416100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 12062802 - 12062926
Alignment:
Q  31 tttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatca-tttcaactatcatcaatataatagtttttcaagctt 129  Q
    ||||||||||||||||||||||||||||||||||||||||| |  | || ||||||||||| | ||||||| |||||||| | |||||||||  ||||||    
T  12062802 tttagttactatataagtcacatggttgactcatttgtacccacatctttcattcttgtattattttcaaccatcatcaagagaatagttttctaagctt 12062901  T
Q  130 ttctctctatatccatggatgccat 154  Q
    |||||||||| | ||||||||||||    
T  12062902 ttctctctattttcatggatgccat 12062926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 31909232 - 31909113
Alignment:
Q  30 gtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagctt 129  Q
    ||||||| ||||||||||||||| | ||||||||||||||||| ||| || |||| ||||||| |||||||||||||||||| ||||| |||  ||||||    
T  31909232 gtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt 31909135  T
Q  130 ttctctctatatccatggatgc 151  Q
    |||||||||| | |||||||||    
T  31909134 ttctctctattttcatggatgc 31909113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 369298 - 369387
Alignment:
Q  30 gtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagtt 119  Q
    |||||||||||| |||||||| ||||||| || ||||||||| |||| ||  ||| ||||||| |||||||||||||||||| |||||||    
T  369298 gtttagttactaaataagtcatatggttggctaatttgtaccgatctcttttatttttgtatcttttcaactatcatcaatacaatagtt 369387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 3785920 - 3785802
Alignment:
Q  33 tagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagctt-tt 131  Q
    |||| ||||||||||||||| | |||||||||||||| |  | ||||  |||||||||||||||||||||| ||||||| |||| |||   |||||| ||    
T  3785920 tagtcactatataagtcacaag-ttgactcatttgtatcactttttt--attcttgtatcatttcaactattatcaatacaataatttcctaagcttctt 3785824  T
Q  132 ctctctatatccatggatgcca 153  Q
    |||||||| | |||||||||||    
T  3785823 ctctctattttcatggatgcca 3785802  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 3788591 - 3788511
Alignment:
Q  75 cttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagctt-ttctctctatatccatggatgccat 154  Q
    ||||| ||||||||||||||||||||||| ||||||| |||| ||||  || ||| |||||||||| | ||||||||||||    
T  3788591 ctttttcattcttgtatcatttcaactattatcaatacaataattttctaaacttcttctctctattttcatggatgccat 3788511  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 19472563 - 19472494
Alignment:
Q  86 ttgtatcatttcaactatcatcaatataatagtttttcaagc-ttttctctctatatccatggatgccat 154  Q
    ||||||||||||||||||  ||||||||||| ||| | |||| |||||||||||| | ||||||||||||    
T  19472563 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccat 19472494  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 19543488 - 19543419
Alignment:
Q  86 ttgtatcatttcaactatcatcaatataatagtttttcaagc-ttttctctctatatccatggatgccat 154  Q
    ||||||||||||||||||  ||||||||||| ||| | |||| |||||||||||| | ||||||||||||    
T  19543488 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccat 19543419  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 19589208 - 19589277
Alignment:
Q  86 ttgtatcatttcaactatcatcaatataatagtttttcaagc-ttttctctctatatccatggatgccat 154  Q
    ||||||||||||||||||  ||||||||||| ||| | |||| |||||||||||| | ||||||||||||    
T  19589208 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccat 19589277  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 4676165 - 4676201
Alignment:
Q  30 gtttagttactatataagtcacatggttgactcattt 66  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4676165 gtttagttactatataagtcacagggttgactcattt 4676201  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 4678110 - 4678146
Alignment:
Q  30 gtttagttactatataagtcacatggttgactcattt 66  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4678110 gtttagttactatataagtcacaaggttgactcattt 4678146  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 27172960 - 27172855
Alignment:
Q  30 gtttagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagctt 129  Q
    |||||||||||||||||||||   ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  27172960 gtttagttactatataagtcattaggt-gactcatttgtaactatcttttccattcttgtatcatttcaactatcatcaatagaatagttttccaagctt 27172862  T
Q  130 ttctctc 136  Q
    |||||||    
T  27172861 ttctctc 27172855  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 18587499 - 18587374
Alignment:
Q  35 gttactatataagtcacatggttgactcatttgtaccta-tcttt-----tccattcttgtatcatttcaactatcatcaatataatagtttttcaag-c 127  Q
    |||||||||||||||||| |||||| ||||||||||| | |||||     | |||  ||||||||||| ||||||||||||||||| | ||||  |||      
T  18587499 gttactatataagtcacaaggttgattcatttgtaccgactctttcatctttcatctttgtatcattttaactatcatcaatataa-atttttctaagtt 18587401  T
Q  128 ttttctctctatatccatggatgccat 154  Q
    |||||||||||| ||||||||||||||    
T  18587400 ttttctctctatttccatggatgccat 18587374  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 39040672 - 39040636
Alignment:
Q  30 gtttagttactatataagtcacatggttgactcattt 66  Q
    ||||||||||||||||||||||| |||||||||||||    
T  39040672 gtttagttactatataagtcacaaggttgactcattt 39040636  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 34 - 168
Target Start/End: Complemental strand, 26608138 - 26608005
Alignment:
Q  34 agttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatca-tttcaactatcatcaatataatagtttttcaagcttttc 132  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||||  |||  |||||||||    
T  26608138 agttactatataagtcacaaggttgactcatctgtacctatctttttcattcttgtatcattttcaactatcatcaatacaata--tttctaagcttttc 26608041  T
Q  133 tctctatatccatggatgccatctttactaacaatt 168  Q
    ||||||| | |||||||| ||| |||  ||||||||    
T  26608040 tctctattttcatggatgtcatgtttcttaacaatt 26608005  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 2577018 - 2577137
Alignment:
Q  33 tagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagctt-tt 131  Q
    |||| ||||||||||||||| | |||||||||||||| |   ||||| ||||||||||||||||||||||| ||||||| |||| ||||  |||||| ||    
T  2577018 tagtcactatataagtcacaag-ttgactcatttgtatca--ctttttcattcttgtatcatttcaactattatcaatacaataattttctaagcttctt 2577114  T
Q  132 ctctctatatccatggatgccat 154  Q
    |||||||| | ||||||||||||    
T  2577115 ctctctattttcatggatgccat 2577137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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