View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16468_high_24 (Length: 234)
Name: NF16468_high_24
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_high_24 |
 | |
|
| [»] scaffold0495 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0495 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 10428 - 10226
Alignment:
| Q |
14 |
aaacatagggcttgggcctaaaaattgaagctcagatttttctagaactttttataccgacctgtaaaagactgtaactcgtacgagctataggtagtct |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
10428 |
aaacatagggcttgggcttaaaaattgaagcttaaatttttctaaaactttttataccgacctgtaaa-gactgtaactcgtacgagctacgggtagtct |
10330 |
T |
|
| Q |
114 |
ggtagcccgtgtaaagaaccattctccttcttctcctctccgtcaattctcatcatttttcaggttacctagttttctcatttttcattcatacccacta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10329 |
ggtagcccgtgtaaagaaccattctccttcttctcctctccgtcaattctcatcatttttcaggttacctagttttctcatttttcattcatacccacta |
10230 |
T |
|
| Q |
214 |
attt |
217 |
Q |
| |
|
|||| |
|
|
| T |
10229 |
attt |
10226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 10233704 - 10233502
Alignment:
| Q |
14 |
aaacatagggcttgggcctaaaaattgaagctcagatttttctagaactttttataccgacctgtaaaagactgtaactcgtacgagctataggtagtct |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
10233704 |
aaacatagggcttgggcttaaaaattgaagcttaaatttttctaaaactttttataccgacctgtaaa-gactgtaactcgtacgagctacgggtagtct |
10233606 |
T |
|
| Q |
114 |
ggtagcccgtgtaaagaaccattctccttcttctcctctccgtcaattctcatcatttttcaggttacctagttttctcatttttcattcatacccacta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10233605 |
ggtagcccgtgtaaagaaccattctccttcttctcctctccgtcaattctcatcatttttcaggttacctagttttctcatttttcattcatacccacta |
10233506 |
T |
|
| Q |
214 |
attt |
217 |
Q |
| |
|
|||| |
|
|
| T |
10233505 |
attt |
10233502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University