View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16468_high_3 (Length: 563)
Name: NF16468_high_3
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 336 - 545
Target Start/End: Original strand, 47349557 - 47349766
Alignment:
| Q |
336 |
catcccaaatgctctgaatctgtgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcgcgttgatcgacaagattaatagccacgag |
435 |
Q |
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| T |
47349557 |
catcccaaatgctccgaatctctgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcgcgttgatcgacaagattaatagccacgag |
47349656 |
T |
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| Q |
436 |
ccgccctttacggaggatctaccgcgtttggatataccaaatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttga |
535 |
Q |
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| T |
47349657 |
ccgtcctttacggaggatctaccgcgtttggatataccaaatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttga |
47349756 |
T |
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| Q |
536 |
gttggtctgt |
545 |
Q |
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|||||||||| |
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| T |
47349757 |
gttggtctgt |
47349766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 78 - 328
Target Start/End: Original strand, 47341477 - 47341728
Alignment:
| Q |
78 |
gtaaagactagaattggagtatttatcaccataaaaaagtaggatcaaatgtactctctgacctttcaagtctttgtcatt-tacgattttgacatcann |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
47341477 |
gtaaagactagaattggagtatttatcaccataaaaaagtaggatcaaatgtactctttgacctttcaagtctttgtcattgtacgattttgacatcatt |
47341576 |
T |
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| Q |
177 |
nnnnngaagttttgactcccaatatgttttttcctctgaaatttaccgtaaagcgaaaccatttaacagggtaacactcaataaaggaaggggcgattaa |
276 |
Q |
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| T |
47341577 |
tttttgaagttttgactcccaatatgttttttcctctgaaatttaccgtaaagcgaaaccatttaacagggtgacactcaataaaggaaggggcggttaa |
47341676 |
T |
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| Q |
277 |
atgtggcaaaannnnnnntgattttatgactcgggactcgagttagctgtta |
328 |
Q |
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| T |
47341677 |
atgtggcaaaaccccccctaattttatgactcgggactcgagttaactgtta |
47341728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 337 - 545
Target Start/End: Original strand, 47347019 - 47347227
Alignment:
| Q |
337 |
atcccaaatgctctgaatctgtgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcgcgttgatcgacaagattaatagccacgagc |
436 |
Q |
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|||||||| || | |||||| |||||||||| |||||||| ||||| ||||||||||||||||| || | |||||| ||||||||||| || |||| |
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| T |
47347019 |
atcccaaacgcaccgaatctccgccacgtgtcacttcaaaccggtggaaaacactatttaggaccgtttgatctgatcgggaagattaatagtcatgagc |
47347118 |
T |
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| Q |
437 |
cgccctttacggaggatctaccgcgtttggatataccaaatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttgag |
536 |
Q |
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| T |
47347119 |
cgccgttcacggaggatttaccgcgtttagatgcgccaaatttctattacactcaggaagatattttgtttgaagaaactcaaaagaaagagggtttgag |
47347218 |
T |
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| Q |
537 |
ttggtctgt |
545 |
Q |
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| T |
47347219 |
ttggtctgt |
47347227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 5401520 - 5401451
Alignment:
| Q |
337 |
atcccaaatgctctgaatctgtgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcg |
406 |
Q |
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||||||||||||| ||||| | ||| ||||||||||| ||||||| || |||||| |||||||||||| |
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| T |
5401520 |
atcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgtaggacccttcg |
5401451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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