View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16468_high_4 (Length: 560)
Name: NF16468_high_4
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 531; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 30409008 - 30409550
Alignment:
| Q |
1 |
ttgcatggttatgattacccttgtaaataatttctgttatgtggccatcgtgtgatctttccacctttttcttgacctgacaattagaatgagtacattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409008 |
ttgcatggttatgattacccttgtaaataatttctgttatgtggccatcgtgtgatctttccacctttttcttgacctgacaattagaatgagtacattt |
30409107 |
T |
|
| Q |
101 |
gtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctctgaggtctttgctcctgctgcatgagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409108 |
gtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctctgaggtctttgctcctgctgcatgagac |
30409207 |
T |
|
| Q |
201 |
atctctttctgttctgcttctaagacatgatgttgtccgatatcctcgctgtggatagaattttcaggcagagtgctttcatcgctagcttcttcggaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409208 |
atctctttctgttctgcttctaagacatgatgttgtccgatatcctcgctgtggatagaattttcaggcagagtgctttcatcgctagcttcttcggaac |
30409307 |
T |
|
| Q |
301 |
gagatatgggtatgtcaacattattggtattgacaatcacgtcatctaccattttcacatcattgtagaaatggactccactatttctagctaaatattc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409308 |
gagatatgggtatgtcaacattattggtattgacaatcacgtcatctaccattttcacatcattgtagaaatggactccactatttctagctaaatattc |
30409407 |
T |
|
| Q |
401 |
acttgaaaaaccttgtgggaatgaaaaatctaacagttgttgaccttgagcaagcatttggctgtctctatgtcctcctccattcatcatgtggcgatta |
500 |
Q |
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| T |
30409408 |
acttgaaaaaccttgtgggaatgaaaaatctaacagttgttgaccttgaacaagcatttggccgtctctatgtcctcctccattcatcatgtggcgatta |
30409507 |
T |
|
| Q |
501 |
ttagaaacctggtgagttcaaggtaaccaaaataccacttagt |
543 |
Q |
| |
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| T |
30409508 |
ttagaaacctggtgaattcaaggtaaccaaaataccacttagt |
30409550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 30395347 - 30395636
Alignment:
| Q |
1 |
ttgcatggttatgattacccttgtaaataatttctgttatgtggccatcgtgtgatctttccacctttttcttgacctgacaattagaatgagtacattt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||| ||||||| |
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| T |
30395347 |
ttgcatggttatgattaccactgtaaataatttctcttatgttgccatcatgtgatctttccacctttttcctgacctgacaattagactgattacattt |
30395446 |
T |
|
| Q |
101 |
gtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctctgaggtctttgctcctgctgcatgagac |
200 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
30395447 |
gtagtagcttctcggatattcactgccttttacttgtttttggccatattttctccaattataaccatcctgtaaggtctttgctcctgctgcatgagat |
30395546 |
T |
|
| Q |
201 |
atctctttctgttctgcttctaagacatgatgttgtccgatatcctcgctgtggatagaattttcaggcagagtgctttcatcgctagct |
290 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||| |
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| T |
30395547 |
atctctttctgttctgcttctaggacatgatgttgtccgatatccttgctgtggattgaattttcaagcagaatgctttcatcgctagct |
30395636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 30395631 - 30395722
Alignment:
| Q |
387 |
ctagctaaatattcacttgaaaaaccttgtgggaatgaaaaatctaacagttgttgaccttgagcaagcatttggctgtctctatgtcctcc |
478 |
Q |
| |
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||||||||||| ||| ||| |||| ||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||| |
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| T |
30395631 |
ctagctaaatagtcatttggaaaatcttctgggaatgaaaaatctaacagttgctgatcttgaacaagcatttggctgtctctatctcctcc |
30395722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 500 - 543
Target Start/End: Original strand, 30395723 - 30395766
Alignment:
| Q |
500 |
attagaaacctggtgagttcaaggtaaccaaaataccacttagt |
543 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
30395723 |
attagaaacctggtgaattcaaggtaaccaaaatatcacttagt |
30395766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 26332563 - 26332619
Alignment:
| Q |
113 |
cggatattcactaccttttacttgtttttggccatattttctccaattataaccatc |
169 |
Q |
| |
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||||| ||| || ||||| |||||||| || ||||||||||||||||| |||||||| |
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| T |
26332563 |
cggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatc |
26332619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 2056390 - 2056297
Alignment:
| Q |
79 |
gacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctc |
172 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||| || || || ||||| || ||||| |||||||||||||||||||||||||| |||||||| |
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| T |
2056390 |
gacaatttgaatgagtacacttgtagtaacttcgagggtactcgctacccttaacttgcttttggccatattttctccaattatatccatcctc |
2056297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 26967038 - 26967134
Alignment:
| Q |
79 |
gacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctctga |
175 |
Q |
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||||||||| | ||| ||||| || || ||||| |||| |||||| ||||| ||||||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
26967038 |
gacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctga |
26967134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 31615355 - 31615428
Alignment:
| Q |
96 |
catttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatc |
169 |
Q |
| |
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||||||||||| |||||||||| |||||| || || ||||| ||||| |||||||||| |||||| || ||||| |
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| T |
31615355 |
catttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatattttcgccaattgtatccatc |
31615428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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