View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16468_low_11 (Length: 458)
Name: NF16468_low_11
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 25460242 - 25459812
Alignment:
| Q |
18 |
agttgaaaaatgctgaacgatataagatgcatatctctgatgatgatagttatcctaaatgtaggcaaacgcctaatcaatcatgcacattttaagagac |
117 |
Q |
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| T |
25460242 |
agttgaaaaatgctgaacgatataagatgcatatctctgatgatgatagttatcctaaatgtaggcaaacgcctaatcaatcatgcacattttaagagac |
25460143 |
T |
|
| Q |
118 |
tgaaatgaagcttgaatgaaatctcagtaacgatagtattggaaacactccttgttattgannnnnnnnnatggtgatcttgttcaaaatttcaattgca |
217 |
Q |
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| T |
25460142 |
tgaaatgaagcttgaatgaaatctcagtaacgatagtattggaaacactccttgtaattgaatgttttttatggtgatcttgttcaaaatttcaattgca |
25460043 |
T |
|
| Q |
218 |
aacttggccaaagtaattcccatggcactgagatgtggggcttgatccatactatgtgtactcaatcgtgttgttttcgaaacagaaactgccaatgttg |
317 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25460042 |
aacttggccaaagtaattcccatggcactgatatgtggggcttgatccatactatgtgtactcaatcgtgttgttttagaaacagaaactgccaatgttg |
25459943 |
T |
|
| Q |
318 |
caaagatggttctcaatcaagacactttcattgcctaccttaaacctctcttggaagaggttattaatcttctcaatctctcttattggtctgctataat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25459942 |
caaagatggttctcaatcaagacactttcattgcctaccttaaacctctcttggaagaggttattaatcttctcaatctctcttattggtctgctataat |
25459843 |
T |
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| Q |
418 |
ttacccgtgctttcgtgaggctaatcctatg |
448 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25459842 |
ttacccgtgctttcgtgaggctaatcctatg |
25459812 |
T |
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