View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16468_low_14 (Length: 394)

Name: NF16468_low_14
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16468_low_14
NF16468_low_14
[»] chr5 (3 HSPs)
chr5 (22-360)||(10117722-10118053)
chr5 (251-361)||(41748270-41748380)
chr5 (262-363)||(34082488-34082589)
[»] chr4 (1 HSPs)
chr4 (230-363)||(18931260-18931391)
[»] scaffold0236 (1 HSPs)
scaffold0236 (251-360)||(12684-12793)
[»] chr6 (2 HSPs)
chr6 (236-323)||(14560552-14560639)
chr6 (251-315)||(6609551-6609615)
[»] chr7 (2 HSPs)
chr7 (230-306)||(246064-246140)
chr7 (265-314)||(38042084-38042133)
[»] chr1 (1 HSPs)
chr1 (278-323)||(10008580-10008625)
[»] chr2 (1 HSPs)
chr2 (278-315)||(25553251-25553288)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 360
Target Start/End: Original strand, 10117722 - 10118053
Alignment:
Q  22 gaatctatatgattacgtgagatgcaagataggaactgtgaaaaggaaaatacaagagatagaaaactacatataaaa-cattggttgaatttcgacgta 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10117722 gaatctatatgattacgtgagatgcaagataggaactgtgaaaaggaaaatacaagagatagaaaactacatataaaaacattggttgaatttcgacgta 10117821  T
Q  121 tatattatgcccaattgcttttcgtaatggtcaacaaattctaacaagatccaaagacatttgttggtttggaattggatcgtgtgcgttcttagaatct 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||    
T  10117822 tatattatgcccaattgcttttcgtaatggtcaacatattctaacaagatccaaagacatttgttggtttggaattggatcgtgt------ttagaatct 10117915  T
Q  221 taggtagggacttgcatcctctccatcgacaattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgc 320  Q
    |||||||||||||| |||||||||| |||||| || ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  10117916 taggtagggacttggatcctctccagcgacaa-ttcact-gatgctccgcagtgaaaatctgaacctttaattacccttttaataattataaatgcttgc 10118013  T
Q  321 aattnnnnnnnttgaatggagaggatctcattggactctc 360  Q
    ||||       ||||| |||||||||||||||||||||||    
T  10118014 aattaaaaaaattgaacggagaggatctcattggactctc 10118053  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 251 - 361
Target Start/End: Original strand, 41748270 - 41748380
Alignment:
Q  251 aattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnnnnttgaatggagaggatctca 350  Q
    ||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||    
T  41748270 aatttcactggatgctctggagtgaaaatctaaacctttaattacccttttaataattataaatgcttgcaattaaaaaaattgaatggagaggatctca 41748369  T
Q  351 ttggactctcc 361  Q
     ||||||||||    
T  41748370 ctggactctcc 41748380  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 363
Target Start/End: Original strand, 34082488 - 34082589
Alignment:
Q  262 atgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnnnnttgaatggagaggatctcattggactctcc 361  Q
    ||||||| | |||||||||| ||| |||||||||||||||||||||||| |||| ||||||||       ||||| ||||| ||||| | ||||||||||    
T  34082488 atgctctacggtgaaaatctaaacctttaattacccttttaataattattaatgcttgcaattaaaaaaattgaacggagatgatcttactggactctcc 34082587  T
Q  362 ag 363  Q
    ||    
T  34082588 ag 34082589  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 230 - 363
Target Start/End: Complemental strand, 18931391 - 18931260
Alignment:
Q  230 acttgcatcctctccatcgacaattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnn 329  Q
    ||||| ||||||||||  || ||||| ||| ||| ||||  ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||         
T  18931391 acttggatcctctccagtgaaaatttcactagatactct--agtgaaaatctgaacttttaattatccttttaataattataaatgcttgcaattaaaaa 18931294  T
Q  330 nnttgaatggagaggatctcattggactctccag 363  Q
      ||||||||||||||||||| || |||||||||    
T  18931293 aattgaatggagaggatctcactgaactctccag 18931260  T

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Target: scaffold0236 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 360
Target Start/End: Original strand, 12684 - 12793
Alignment:
Q  251 aattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnnnnttgaatggagaggatctca 350  Q
    ||||| ||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||        || ||||||||||||||||    
T  12684 aatttcactggatactctgcagtgtagatctgaacctttaattacccttttaataattataaatgtttgaaatgaaaaaaattaaatggagaggatctca 12783  T
Q  351 ttggactctc 360  Q
    ||||| ||||    
T  12784 ttggattctc 12793  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 14560639 - 14560552
Alignment:
Q  236 atcctctccatcgacaattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaat 323  Q
    ||||||||||  || ||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||  |||||||    
T  14560639 atcctctccagtgagaatttcactggatgctctgcagtgaaaatctaaacttttaattacctttttaataattataaatacttgcaat 14560552  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 6609551 - 6609615
Alignment:
Q  251 aattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatg 315  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||    
T  6609551 aattttactggatgctctgcagtgtagatctgaacctttaattacccttttcataattataaatg 6609615  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 246064 - 246140
Alignment:
Q  230 acttgcatcctctccatcgacaattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataa 306  Q
    ||||| |||||||||   || ||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  246064 acttggatcctctccgatgaaaatttcactggatgctctgcagtgaaaatctaaacctttaattacctttttaataa 246140  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 38042133 - 38042084
Alignment:
Q  265 ctctgcagtgaaaatctgaacatttaattacccttttaataattataaat 314  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  38042133 ctctgcagtgaaaatctaaacttttaactacccttttaataattataaat 38042084  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 10008625 - 10008580
Alignment:
Q  278 atctgaacatttaattacccttttaataattataaatgtttgcaat 323  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||    
T  10008625 atctgaaactttaattaccctcttaataattataaatgtttgcaat 10008580  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 25553251 - 25553288
Alignment:
Q  278 atctgaacatttaattacccttttaataattataaatg 315  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  25553251 atctaaacctttaattacccttttaataattataaatg 25553288  T

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