View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16468_low_15 (Length: 385)

Name: NF16468_low_15
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16468_low_15
NF16468_low_15
[»] chr2 (8 HSPs)
chr2 (1-370)||(41104646-41105015)
chr2 (6-189)||(37828568-37828752)
chr2 (76-181)||(4865493-4865598)
chr2 (6-97)||(41104619-41104711)
chr2 (115-189)||(29667598-29667673)
chr2 (103-190)||(34887854-34887940)
chr2 (103-188)||(25557866-25557952)
chr2 (8-62)||(4865550-4865603)
[»] chr1 (5 HSPs)
chr1 (7-130)||(30892076-30892199)
chr1 (6-188)||(30891987-30892169)
chr1 (6-153)||(29861553-29861698)
chr1 (103-153)||(42175224-42175274)
chr1 (105-173)||(628737-628804)
[»] chr6 (8 HSPs)
chr6 (34-181)||(34396897-34397045)
chr6 (76-189)||(5449515-5449630)
chr6 (139-188)||(4974721-4974771)
chr6 (6-62)||(1706753-1706808)
chr6 (55-153)||(1706739-1706837)
chr6 (8-50)||(34396935-34396977)
chr6 (13-74)||(34396908-34396969)
chr6 (6-50)||(5449594-5449637)
[»] chr5 (11 HSPs)
chr5 (76-153)||(17441355-17441432)
chr5 (6-74)||(7148397-7148464)
chr5 (38-188)||(7148312-7148464)
chr5 (44-181)||(17476093-17476231)
chr5 (6-62)||(17476118-17476174)
chr5 (117-160)||(18936574-18936617)
chr5 (6-64)||(7172462-7172520)
chr5 (103-151)||(7634910-7634958)
chr5 (6-49)||(7148390-7148433)
chr5 (8-74)||(17476089-17476154)
chr5 (6-62)||(17441348-17441403)
[»] chr4 (7 HSPs)
chr4 (8-178)||(53801395-53801566)
chr4 (76-181)||(12828510-12828617)
chr4 (6-64)||(20821781-20821839)
chr4 (6-64)||(53801424-53801482)
chr4 (19-68)||(12828485-12828533)
chr4 (103-188)||(26310244-26310328)
chr4 (6-62)||(12828503-12828559)
[»] chr7 (7 HSPs)
chr7 (76-153)||(42602600-42602677)
chr7 (8-50)||(2169177-2169219)
chr7 (141-181)||(2169047-2169088)
chr7 (38-138)||(29340672-29340773)
chr7 (6-63)||(29340716-29340773)
chr7 (76-182)||(1505579-1505687)
chr7 (6-62)||(23475024-23475080)
[»] chr3 (2 HSPs)
chr3 (6-93)||(30259701-30259788)
chr3 (38-188)||(30259636-30259788)
[»] chr8 (1 HSPs)
chr8 (122-181)||(29795866-29795926)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 41104646 - 41105015
Alignment:
Q  1 ttcatcgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtgactaactcatgtagggtataacccagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  41104646 ttcatcgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtgactaactcatgtaggatataacccagc 41104745  T
Q  101 gcgagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactcagacggggatattttggtcagtttgtatggaagtgaa-annnnnnnnn 199  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||               
T  41104746 gcgagttaagtcatgtaggttatatttaagtttaccgagcatgagttaactcagacggggatattttgatcagtttgtatggaagtgaattttttttctt 41104845  T
Q  200 cggaaaagagcaattttcatactcctattgattctaattaatattcggcccataaaagcacacaaaatgaa-nnnnnnnncctcttagtctagcgaaaaa 298  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  41104846 cggaaaagagcaattttcatattcctatagattgtaattaatattcggcccataaaagcacacaaaatgaatttttttttcctcttagtctagcgaaaaa 41104945  T
Q  299 aggacacacaagataagtttttccctcctaatcaaggtacacaagattaaaatatcaattatgtcaacactt 370  Q
    |||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41104946 agg--acacaagataagtttttcgctcctaatcaaggtacacaagattaaaatatcaattatgtcaacactt 41105015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 37828568 - 37828752
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtgact-aactcatgtagggtataacccagtgcga 104  Q
    ||||||||||||||   | |||||||||| ||||||| ||||||| ||||| |||||| |||||||||| | |||||||||||| |||||||||| | ||    
T  37828568 cgtgagttaactcacacaggttataacct-agcgtgagttaactcatgtagcttataatcccagcgtgagttaactcatgtaggttataacccagcgtga 37828666  T
Q  105 gttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactca-gacggggatattttggtcagtttgtatggaagtgaa 189  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| |  |||| ||||||||| ||||||||| | ||||||    
T  37828667 gttaactcatgtaggttatatttcagcttaccgagcgtgagttaactcacgtggggggtattttggtaagtttgtataggagtgaa 37828752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 4865598 - 4865493
Alignment:
Q  76 taactcatgtagggtataacccagtgcgagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactcagacggggatattttggtcagtt 175  Q
    ||||||| ||||| |||||||||| | ||||||| |||||||||||||| ||||| ||||| | ||||||||||||||   |||| ||||||||| ||||    
T  4865598 taactcaagtaggttataacccagcgtgagttaactcatgtaggttatacttcagcttaccaaacgtgagttaactcacgtgggggtattttggtaagtt 4865499  T
Q  176 tgtatg 181  Q
    ||||||    
T  4865498 tgtatg 4865493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 41104619 - 41104711
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtgac-taactcatgtagggtataaccc 97  Q
    |||||||||||||||||| |||||||| ||| ||||| ||||||| |||| ||||||||| ||||||||| |||||| |||||| ||||||||    
T  41104619 cgtgagttaactcatgtaggttataacttcatcgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccc 41104711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 29667673 - 29667598
Alignment:
Q  115 gtaggttatatttcagtttaccgagcgtgagttaactcagacgg-ggatattttggtcagtttgtatggaagtgaa 189  Q
    |||||||||||||||| |||||||||||||||||||||| ||||  | |||||| || ||||||||||| ||||||    
T  29667673 gtaggttatatttcagcttaccgagcgtgagttaactcacacggaaggtatttttgttagtttgtatgggagtgaa 29667598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 34887940 - 34887854
Alignment:
Q  103 gagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactcagacggggatattttggtcagtttgtatggaagtgaaa 190  Q
    ||||||| |||||||||||||| ||||| ||| ||| ||||| ||||||||   |||| ||||||||| ||||||||||| |||||||    
T  34887940 gagttaactcatgtaggttatacttcagcttatcgaacgtgaattaactcacgtgggg-tattttggttagtttgtatgggagtgaaa 34887854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 25557952 - 25557866
Alignment:
Q  103 gagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactcagacgggga-tattttggtcagtttgtatggaagtga 188  Q
    ||||||| |||||||||||||| ||||  |||||||  |||||||||| ||   ||||| ||||||||||||||||||||| |||||    
T  25557952 gagttaactcatgtaggttatacttcatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttgtatgggagtga 25557866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 4865603 - 4865550
Alignment:
Q  8 tgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttata 62  Q
    |||||||||||| ||| ||||||||| |||||||| ||||||| |||||||||||    
T  4865603 tgagttaactcaagtaggttataacc-cagcgtgagttaactcatgtaggttata 4865550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 30892199 - 30892076
Alignment:
Q  7 gtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtga-ctaactcatgtagggtataacccagtgcgag 105  Q
    ||||||||||||| ||| |||||||||| ||||||| ||||||| |||| |||||||||| |||||||  ||||||||||||| |||||||||| |  ||    
T  30892199 gtgagttaactcacgtaggttataacct-agcgtgagttaactcatgtatgttataacccaagcgtgagttaactcatgtaggttataacccagcgtaag 30892101  T
Q  106 ttaagtcatgtaggttatatttcag 130  Q
    |||| ||||||| |||||| |||||    
T  30892100 ttaactcatgtaagttataattcag 30892076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 30892169 - 30891987
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtga-ctaactcatgtagggtataacccagtgcga 104  Q
    |||||||||||||||||| |||||||||  ||||||| ||||||| |||||||||||| |||||||| |  ||||||||||| | |||||  ||| | ||    
T  30892169 cgtgagttaactcatgtatgttataacccaagcgtgagttaactcatgtaggttataa-cccagcgtaagttaactcatgtaagttataattcagcgtga 30892071  T
Q  105 gttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactcagacggggatattttggtcagtttgtatggaagtga 188  Q
    ||||| ||| | | |||||| | ||| ||||| | |||||| |||||||   | || |||||||||||||||||||| ||||||    
T  30892070 gttaattcacgcaagttatactccagcttaccaaacgtgagctaactcacgtgaggttattttggtcagtttgtatgaaagtga 30891987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 29861553 - 29861698
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtga-ctaactcatgtagggtataacccagtgcga 104  Q
    |||||||||||||| | | ||||||||| |||||||| ||||||| ||||||||||||||| | | |||  |||||||  |||| ||||||| || | ||    
T  29861553 cgtgagttaactcacgcaggttataacc-cagcgtgagttaactcatgtaggttataaccctaacatgagttaactca--taggttataacctagcgtga 29861649  T
Q  105 gttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactca 153  Q
    ||||| | ||||| |||||||||||| ||||||||| ||||||||||||    
T  29861650 gttaactaatgtatgttatatttcagcttaccgagcatgagttaactca 29861698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 42175224 - 42175274
Alignment:
Q  103 gagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactca 153  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||||||    
T  42175224 gagttaaattatgtaggttatatttcagcttaccgagcgtgagttaactca 42175274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 628737 - 628804
Alignment:
Q  105 gttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactcagacggggatattttggtcag 173  Q
    ||||| ||| |||||||||||||| | ||||||| | |||||||||| | |||||| ||||||||||||    
T  628737 gttaactcacgtaggttatatttctgcttaccgaacatgagttaacttatacgggg-tattttggtcag 628804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 34396897 - 34397045
Alignment:
Q  34 tcagcgtgacttaactcgtgtaggttataaccccagcgtga-ctaactcatgtagggtataa-cccagtgcgagttaagtcatgtaggttatatttcagt 131  Q
    |||||||||  |||||| ||||||||||||||||||  |||  ||||||||||||| ||||| | ||| | ||||||| ||| | |||||||| |||||     
T  34396897 tcagcgtgaactaactcatgtaggttataaccccagtttgagttaactcatgtaggttataatctcagcgtgagttaactcacgcaggttatacttcagc 34396996  T
Q  132 ttaccgagcgtgagttaactcagacggggatattttggtcagtttgtatg 181  Q
    ||| ||||||||| ||||||||  | |||||||||| |||||||||||||    
T  34396997 ttatcgagcgtgaattaactcacgc-gggatattttagtcagtttgtatg 34397045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 5449630 - 5449515
Alignment:
Q  76 taactcatgtagggtataacccagtgcgagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactcagacgg--ggatattttggtcag 173  Q
    ||||||||||||| |||||||||| | ||||||| ||| | | |||||| |||| ||| |||||||||| ||||||||  |||  ||  |||||||||||    
T  5449630 taactcatgtaggttataacccagcgtgagttaactcacgcaagttatacttcaatttcccgagcgtgaattaactcacgcggaagggcattttggtcag 5449531  T
Q  174 tttgtatggaagtgaa 189  Q
    ||||||||| ||||||    
T  5449530 tttgtatgggagtgaa 5449515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 4974771 - 4974721
Alignment:
Q  139 gcgtgagttaactcagacggg-gatattttggtcagtttgtatggaagtga 188  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  4974771 gcgtgagttaactaacacgggagatattttggtcagtttgtatggaagtga 4974721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 1706753 - 1706808
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttata 62  Q
    ||||| |||||||||||| ||||||||| || ||||| |||||||||||||||||||    
T  1706753 cgtgaattaactcatgtaggttataacc-caacgtgaattaactcgtgtaggttata 1706808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 1706739 - 1706837
Alignment:
Q  55 aggttataaccccagcgtgact-aactcatgtagggtataacccagtgcgagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactca 153  Q
    |||||||||||| ||||||| | |||||||||||| |||||||||  | || |||| || ||||||||||| ||||  ||||||| | ||||||||||||    
T  1706739 aggttataaccc-agcgtgaattaactcatgtaggttataacccaacgtgaattaactcgtgtaggttatacttcaacttaccgaacatgagttaactca 1706837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 34396935 - 34396977
Alignment:
Q  8 tgagttaactcatgtaagttataacctcagcgtgacttaactc 50  Q
    |||||||||||||||| ||||||| |||||||||| |||||||    
T  34396935 tgagttaactcatgtaggttataatctcagcgtgagttaactc 34396977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 34396908 - 34396969
Alignment:
Q  13 taactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtga 74  Q
    ||||||||||| ||||||||| |||  ||| ||||||| |||||||||||| | ||||||||    
T  34396908 taactcatgtaggttataaccccagtttgagttaactcatgtaggttataatctcagcgtga 34396969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 5449637 - 5449594
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactc 50  Q
    |||||||||||||||||| ||||||||| |||||||| |||||||    
T  5449637 cgtgagttaactcatgtaggttataacc-cagcgtgagttaactc 5449594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 17441355 - 17441432
Alignment:
Q  76 taactcatgtagggtataacccagtgcgagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactca 153  Q
    ||||||||| ||| ||||||  || | ||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  17441355 taactcatgcaggttataacatagcgtgagttaactcatgtaggttatatttcagcttaccgagcgtgagttaactca 17441432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 7148464 - 7148397
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtga 74  Q
    |||||||||||||| ||| |||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  7148464 cgtgagttaactcacgtaggttataac-tcagcgtgagttaactcatgtaggttataaccccagcgtga 7148397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 7148464 - 7148312
Alignment:
Q  38 cgtgacttaactcgtgtaggttataaccccagcgtgact-aactcatgtagggtataaccc-agtgcgagttaagtcatgtaggttatatttcagtttac 135  Q
    ||||| |||||||  |||||||||||| | ||||||| | |||||||||||| |||||||| || | ||||||| | |  |||||||||||||||  ||     
T  7148464 cgtgagttaactcacgtaggttataactc-agcgtgagttaactcatgtaggttataaccccagcgtgagttaacttaaataggttatatttcagcctat 7148366  T
Q  136 cgagcgtgagttaactca-gacggggatattttggtcagtttgtatggaagtga 188  Q
    |||||||||||||||||| |  |||  ||||||||||||||||||||| |||||    
T  7148365 cgagcgtgagttaactcacgtagggagtattttggtcagtttgtatgggagtga 7148312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 17476093 - 17476231
Alignment:
Q  44 ttaactcgtgtaggttataaccccagcgtgact-aactcatgtagggtataacc-cagtgcgagttaagtcatgtaggttatatttcagtttaccgagcg 141  Q
    |||||||  ||||||||||| || ||||||| | |||||||||||| ||||||| ||  | ||||||| |||||||||||||| || || ||||||| ||    
T  17476093 ttaactcacgtaggttataatcc-agcgtgagttaactcatgtaggttataacctcaacgtgagttaattcatgtaggttatactttagcttaccgaacg 17476191  T
Q  142 tgagttaactcagacggggatattttggtcagtttgtatg 181  Q
     |||||||||||   || | ||||||||||||||||||||    
T  17476192 cgagttaactcacgtggaggtattttggtcagtttgtatg 17476231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 17476118 - 17476174
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttata 62  Q
    |||||||||||||||||| |||||||||||| ||||| |||| || |||||||||||    
T  17476118 cgtgagttaactcatgtaggttataacctcaacgtgagttaattcatgtaggttata 17476174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 18936617 - 18936574
Alignment:
Q  117 aggttatatttcagtttaccgagcgtgagttaactcagacgggg 160  Q
    |||||||| |||||||||||||||||||||||||||| ||||||    
T  18936617 aggttatacttcagtttaccgagcgtgagttaactcacacgggg 18936574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 7172462 - 7172520
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataac 64  Q
    |||||||||||| ||||| |||||||||||||||||| ||||||| ||| | |||||||    
T  7172462 cgtgagttaacttatgtaggttataacctcagcgtgagttaactcatgtcgattataac 7172520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 7634910 - 7634958
Alignment:
Q  103 gagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaact 151  Q
    ||||||| ||||||||||||||||| || ||||||||| ||||||||||    
T  7634910 gagttaattcatgtaggttatattttagcttaccgagcctgagttaact 7634958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 7148433 - 7148390
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaact 49  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||    
T  7148433 cgtgagttaactcatgtaggttataaccccagcgtgagttaact 7148390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 17476089 - 17476154
Alignment:
Q  8 tgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtga 74  Q
    |||||||||||| ||| ||||||| | |||||||| ||||||| |||||||||||||| || |||||    
T  17476089 tgagttaactcacgtaggttataatc-cagcgtgagttaactcatgtaggttataacctcaacgtga 17476154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 17441348 - 17441403
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttata 62  Q
    |||||||||||||||| | |||||||| | ||||||| ||||||| |||||||||||    
T  17441348 cgtgagttaactcatgcaggttataacat-agcgtgagttaactcatgtaggttata 17441403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 53801395 - 53801566
Alignment:
Q  8 tgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtga-ctaactcatgtagggtataacccagtgcgagt 106  Q
    |||||||||||  ||| ||||||||| || ||||| ||||||| |||||||||||||||| ||||||  ||| ||||||| | |||||| ||| | ||||    
T  53801395 tgagttaactctcgtatgttataacc-caacgtgagttaactcatgtaggttataaccccggcgtgagttaattcatgtacgttataactcagcgtgagt 53801493  T
Q  107 taagtcatgtaggttatatttcagtttaccgagcgtgagttaactcagacgggga-tattttggtcagtttgt 178  Q
    |||    ||||||||||| ||||| ||| ||| ||||||||||||||   || || |||||||||||||||||    
T  53801494 taacatttgtaggttatacttcagcttatcgaacgtgagttaactcacgtggagagtattttggtcagtttgt 53801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 12828510 - 12828617
Alignment:
Q  76 taactcatgtagggtataaccc-agtgcgagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactca-gacggggatattttggtcag 173  Q
    ||||||||||||| |||||||| | || |||||||  ||||||||||||| ||||  ||||||| |||||||||||||| |   | ||||||||||||||    
T  12828510 taactcatgtaggttataaccccattgtgagttaacccatgtaggttatacttcatcttaccgaacgtgagttaactcacgtgagagatattttggtcag 12828609  T
Q  174 tttgtatg 181  Q
    ||||||||    
T  12828610 tttgtatg 12828617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 20821839 - 20821781
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataac 64  Q
    |||||||||||||||||| ||||||||  | |||||| ||||||| |||||||||||||    
T  20821839 cgtgagttaactcatgtaggttataacaccggcgtgagttaactcatgtaggttataac 20821781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 53801424 - 53801482
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataac 64  Q
    |||||||||||||||||| ||||||||| | |||||| |||| || |||| ||||||||    
T  53801424 cgtgagttaactcatgtaggttataaccccggcgtgagttaattcatgtacgttataac 53801482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 12828485 - 12828533
Alignment:
Q  19 atgtaagttataacctcagcgtgacttaactcgtgtaggttataacccca 68  Q
    ||||||||||||||| || ||||| ||||||| |||||||||||||||||    
T  12828485 atgtaagttataacc-caacgtgagttaactcatgtaggttataacccca 12828533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 26310328 - 26310244
Alignment:
Q  103 gagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactcagacggggatattttggtcagtttgtatggaagtga 188  Q
    ||||||| || | ||||||||||||||| |||| ||  ||||||||| |||  ||| | ||||||||||||||||||||| |||||    
T  26310328 gagttaactcgtataggttatatttcagcttactgaatgtgagttaattcatgcggag-tattttggtcagtttgtatgggagtga 26310244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 12828503 - 12828559
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttata 62  Q
    |||||||||||||||||| ||||||||| ||  |||| ||||| | |||||||||||    
T  12828503 cgtgagttaactcatgtaggttataaccccattgtgagttaacccatgtaggttata 12828559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 42602677 - 42602600
Alignment:
Q  76 taactcatgtagggtataacccagtgcgagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactca 153  Q
    ||||||||||||| |||||| ||| | ||||||| ||||||| |||||||||||||||| | | ||||||||||||||    
T  42602677 taactcatgtaggttataactcagcgtgagttaactcatgtatgttatatttcagtttatcaatcgtgagttaactca 42602600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 2169177 - 2169219
Alignment:
Q  8 tgagttaactcatgtaagttataacctcagcgtgacttaactc 50  Q
    |||||||||||||||| ||||||||||||| |||| |||||||    
T  2169177 tgagttaactcatgtaggttataacctcagtgtgagttaactc 2169219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 2169088 - 2169047
Alignment:
Q  141 gtgagttaactcagacgggga-tattttggtcagtttgtatg 181  Q
    |||||||||||||| |||||| ||||||||||||||||||||    
T  2169088 gtgagttaactcaggcggggaatattttggtcagtttgtatg 2169047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 29340773 - 29340672
Alignment:
Q  38 cgtgacttaactcgtgtaggttataaccccagcgt-gactaactcatgtagggtataacccagtgcgagttaagtcatgtaggttatatttcagtttacc 136  Q
    ||||| ||||||| ||||||||||||||||| |||  | ||||||||||||| |||||  ||| |  |||||| |||| || | |||| |||||||||||    
T  29340773 cgtgagttaactcatgtaggttataaccccaccgtaaaataactcatgtaggttataatacagagtaagttaactcatatacgatatacttcagtttacc 29340674  T
Q  137 ga 138  Q
    ||    
T  29340673 ga 29340672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 29340773 - 29340716
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataa 63  Q
    |||||||||||||||||| ||||||||| || ||| |  |||||| ||||||||||||    
T  29340773 cgtgagttaactcatgtaggttataaccccaccgtaaaataactcatgtaggttataa 29340716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 1505687 - 1505579
Alignment:
Q  76 taactcatgtagggtataaccc-agtgcgagttaagtcatgtaggttatatttcagtttaccgagcgtgagttaactcagacgg-ggatattttggtcag 173  Q
    ||||||||||||| ||||| || |||| |||||||  |||| |||||||| ||||| ||| |||  ||||||||||||| | || || |||||||||| |    
T  1505687 taactcatgtaggttataatcctagtgtgagttaacccatgcaggttatacttcagcttatcgaatgtgagttaactcacatggagggtattttggtcgg 1505588  T
Q  174 tttgtatgg 182  Q
    ||| |||||    
T  1505587 tttatatgg 1505579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 23475080 - 23475024
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttata 62  Q
    ||||||||| ||||||||  |||||||| |||| ||| ||||||| |||||||||||    
T  23475080 cgtgagttagctcatgtagattataaccccagcatgagttaactcatgtaggttata 23475024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 30259788 - 30259701
Alignment:
Q  6 cgtgagttaactcatgtaagttataacctcagcgtgacttaactcgtgtaggttataaccccagcgtga-ctaactcatgtagggtata 93  Q
    |||||||||||||||||| || |||||| |||| ||| ||||||| ||||||||||||||||| |||||  ||||||||||||| ||||    
T  30259788 cgtgagttaactcatgtaggtcataacc-cagcatgagttaactcttgtaggttataaccccaacgtgagttaactcatgtaggttata 30259701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 30259788 - 30259636
Alignment:
Q  38 cgtgacttaactcgtgtaggttataaccccagcgtgact-aactcatgtagggtataaccc-agtgcgagttaagtcatgtaggttatatttcagtttac 135  Q
    ||||| ||||||| ||||||| ||||||| ||| ||| | ||||| |||||| |||||||| |  | ||||||| |||||||||||||| ||||  | ||    
T  30259788 cgtgagttaactcatgtaggtcataaccc-agcatgagttaactcttgtaggttataaccccaacgtgagttaactcatgtaggttatacttcatctgac 30259690  T
Q  136 cgagcgtgagttaactca---gacggggatattttggtcagtttgtatggaagtga 188  Q
    ||| ||||||||||||||   |||| |  |||||||||||||||||||| ||||||    
T  30259689 cgaacgtgagttaactcacgtgacgag--tattttggtcagtttgtatgaaagtga 30259636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 29795866 - 29795926
Alignment:
Q  122 atatttcagtttaccgagcgtgagttaactcagacgggga-tattttggtcagtttgtatg 181  Q
    ||||||||| |||||||||||||||||||||| ||||| | ||||||||||| ||||||||    
T  29795866 atatttcagcttaccgagcgtgagttaactcacacgggaagtattttggtcaatttgtatg 29795926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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