View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16468_low_16 (Length: 383)
Name: NF16468_low_16
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 220138 - 220393
Alignment:
| Q |
1 |
gtgaagtgataaggaggttaaagatttgattcatatggtaaacaaaaatattgtgatggacatgaggtttagagttttacacgacatattttgattttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
220138 |
gtgaagtgataaggaggttaaagatttgattcatatggtaaacaaaaatattgtgatggacatgaggtttagagttttacacgacatattttgattttgc |
220237 |
T |
|
| Q |
101 |
acaannnnnnnnn-atcttttgcacaatctatatatagaaagtaatgtgacgtatatataacttcatttgtttcaatttacacatgcagtcaaacacggc |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
220238 |
acaattttttttttatcttttgcacaatctatatatagaaattaatgtgacgtatatataacttcatttgtttcaatttacacatgcagtcaaacacggc |
220337 |
T |
|
| Q |
200 |
tttaaagcaaattggagcaactgttaggaatgcagggtcatatatgaagcaaagtg |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
220338 |
tttaaagcaaattggagcaactgttaggaatgcagggtcatatatgaagcaaagtg |
220393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 220426 - 220505
Alignment:
| Q |
288 |
tcggtggagcaattatctgacctactttctttctaccacacaatggggcagatttgttctcaagtattagaaagaaagtt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
220426 |
tcggtggagcaattatctgacctactttctttctaccacacaatggggcagatttgttctcaagtattagaaagaaagtt |
220505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University