View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16468_low_19 (Length: 306)
Name: NF16468_low_19
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 13299002 - 13299278
Alignment:
| Q |
19 |
ctaaatacaaatattttgtttcttaataaaaggctaaactttctatctaaaaaaggcttaacctaattaaaaagttctcaatttcttttgttctctttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13299002 |
ctaaatacaaatattttgtttcttaaaaaaaggctaaactttctatctaaaaaaggcttaacctaattaaaaagttctcaatttcttttgttctctttta |
13299101 |
T |
|
| Q |
119 |
gttagctattgcaattgtcaaactcatattcatatattgcacatgcatggatatattgaacttaattgcatttacaaaaatcaacaaagatggccaaact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13299102 |
gttagctattgcaattgtcaaactcatattcatatattgcacatgcatgg--atattgaacttaattgcatttacaaaaatcaacaaagatggccaaact |
13299199 |
T |
|
| Q |
219 |
aaagccacaagaaattgacacgtgtcctctcattacttctatgtttgttaacaattgaaaccacctttcctattagccc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13299200 |
aaagccacaagaaattgacacgtgtcctctcattacttctatgtttgttaacaattgaaaccacctttctcattagccc |
13299278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University