View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16468_low_2 (Length: 577)
Name: NF16468_low_2
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 17 - 575
Target Start/End: Original strand, 33374114 - 33374672
Alignment:
| Q |
17 |
actaagagcttcaacaatattataaaaccttcctaacttaggatccatccatcttctaacaatttcttctctcttttgttctgtatcaaacacacactta |
116 |
Q |
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| T |
33374114 |
actaagagcttcaacaacattataaaacctccctaacttaggatccatccatcttctaacaatttcttctctcttttgttctgtatcaaacacacactta |
33374213 |
T |
|
| Q |
117 |
aaatctttccacaacatattcacctcgctatgttcgctatacgacaaaaacttctttcctgttattagctccatcagaaccattccatagccaaaaacat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
33374214 |
aaatctttccacaacatattcacctcgctatgttcgctatacgacaaaaacttctttcctgttattagctccatcagaaccattccataacctaaaacat |
33374313 |
T |
|
| Q |
217 |
caacttttgttatcataggattctttgtagttcttgcaacagaaaaatttgctatcttggccttaaattttgagtcaagaagaatgttacttgatttgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33374314 |
caacttttgttatcataggattctttgtagttcttgcaacagaaaaatttgctatcttggccttaaattttgagtcaagaagaatgttacttgatttgat |
33374413 |
T |
|
| Q |
317 |
gttcctatggactatacatggttgtgtgtgttcatgcaagtattgcagccctattgcaatatcaactgctatgcttaacctctgactccaactaagagtg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33374414 |
gttcctatggactatacatggttgtgtgtgttcatgcaagtattgcagccctattgcaatatcaactgctatgcttaacctctgactccaactaagagtg |
33374513 |
T |
|
| Q |
417 |
caaaactcagataataaccagttataaagagatccattttcagcatattcatatacaagaaagtgatttccatcatatcctgaagagactcctattagtt |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
33374514 |
caaaactcagataataaccagttataaagagatccattttcagcatattcatatacaagaaagtgatttccatcatatcctgaagagacacctactagtt |
33374613 |
T |
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| Q |
517 |
tcactagatttgcatgatttaccttttgtaaaatcaccaactcttctgtgactgtgata |
575 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33374614 |
tcactagatttgcatgatttaccttttgtaaaatcatcaactcttctgtgactgtgata |
33374672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 375
Target Start/End: Complemental strand, 7169824 - 7169710
Alignment:
| Q |
261 |
aaatttgctatcttggccttaaattttgagtcaagaagaatgttacttgatttgatgttcctatggactatacatggttgtgtgtgttcatgcaagtatt |
360 |
Q |
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||||| ||||||||||||||||| |||||| ||||||| || ||||||| | |||||| || |||| ||| | ||| | || |||||||||| ||||| |
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| T |
7169824 |
aaattcgctatcttggccttaaaatttgagccaagaaggatattacttgttgtgatgtctctgtggattattcgtggataagtatgttcatgcatgtatt |
7169725 |
T |
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| Q |
361 |
gcagccctattgcaa |
375 |
Q |
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|||| || ||||||| |
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| T |
7169724 |
gcagaccgattgcaa |
7169710 |
T |
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