View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16468_low_20 (Length: 289)
Name: NF16468_low_20
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 14195245 - 14194978
Alignment:
| Q |
19 |
aacatatcaaatgtgtctacggccttttattatttgcactt---taatattttaattgtatataataatggaacaaatgaaatgaataacaaagttataa |
115 |
Q |
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| T |
14195245 |
aacatatcaaatgtgtctacggccttttattatttgcacttctttagtattttaattgtatataataatggaacaaatgaaatgaataacaaagttataa |
14195146 |
T |
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| Q |
116 |
ttaatccttttt-cattcactttccaagaattaaaatgagaattttgttctatcccgtcataaaatactaaaataatgaatgaaagttctattccattca |
214 |
Q |
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|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14195145 |
ttaatcattttttcattcactttccaagaattaaaatgaaaattttgttctatcccgtcataaaatactaaaataatgaatgaaaattctattccattca |
14195046 |
T |
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| Q |
215 |
ctacaagaaaatgaggtaatacatacacacggaatccagtgaggattcatagatatggtttcttctca |
282 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14195045 |
ctacaagaaaataaggtaatacatacacacggaatatagtgaggattcatagatatggtttcttctca |
14194978 |
T |
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