View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16468_low_21 (Length: 280)
Name: NF16468_low_21
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 703043 - 703263
Alignment:
| Q |
16 |
caaaggcaaatgcacaaggtactaaagctaagaaggctgtcacaaacaagattgaagtcttcatgnnnnnnnnggaacaattcaatttatgtattttgct |
115 |
Q |
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|||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
703043 |
caaaggcaaaggcacaagatgctaaagctaagaaggctgtcacaaacaagattgaagtcttcatgttttttt-ggaacaattcaatttatgtattttgct |
703141 |
T |
|
| Q |
116 |
tgtatatggttggttatgcaaacatggtgtctttttataagcaagtgtgacattggaatagttttacttgcacaaagcctataaagaccaagtaaatctt |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
703142 |
tgtatatggttggttatgcaaacatggtgtctatttataagcaagtgtgacattggaatagttttacttgcacaaagcctataaagaccaagtaaatctt |
703241 |
T |
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| Q |
216 |
aattaatcaaagcagcgtataa |
237 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
703242 |
aattaatcaaagcagcgtataa |
703263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 712395 - 712175
Alignment:
| Q |
16 |
caaaggcaaatgcacaaggtactaaagctaagaaggctgtcacaaacaagattgaagtcttcatgnnnnnnnnggaacaattcaatttatgtattttgct |
115 |
Q |
| |
|
|||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
712395 |
caaaggcaaaggcacaagatgctaaagctaagaaggctgtcacaaacaagattgaagtcttcatgttttttt-ggaacaattcaatttatgtattttgct |
712297 |
T |
|
| Q |
116 |
tgtatatggttggttatgcaaacatggtgtctttttataagcaagtgtgacattggaatagttttacttgcacaaagcctataaagaccaagtaaatctt |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
712296 |
tgtatatggttggttatgcaaacatggtgtctatttataagcaagtgtgacattggaatagttttacttgcacaaagcctataaagaccaagtaaatctt |
712197 |
T |
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| Q |
216 |
aattaatcaaagcagcgtataa |
237 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
712196 |
aattaatcaaagcagcgtataa |
712175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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