View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16468_low_7 (Length: 528)
Name: NF16468_low_7
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Complemental strand, 12277578 - 12277080
Alignment:
| Q |
18 |
ccgttgttgtgtgtactttgcgatagcacggaagaatcatccactcacttgttccttcattgtcgctactaaggtgtgagaactccttatgaggtggctg |
117 |
Q |
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| T |
12277578 |
ccgttgttgtgtgtactttgcgatagcgcggaagaatcatccactcacttgttccttcattgtcgctactaaggtgtgggaactccttatgaggtggctg |
12277479 |
T |
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| Q |
118 |
caagggtattttataatacctccgaatctattgtatcattgggagtgttggattaatatggcaatgaacaaaagggttcgtaagggatatcgtctcattt |
217 |
Q |
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| T |
12277478 |
caagggtattttataatacctccgaatctgttgtatcattgggagtgttggattaatatggcaatgaacaaaagggttcgtaagggatatcgtctcattt |
12277379 |
T |
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| Q |
218 |
ggcatgctatggtgtggatgttatggaaaaggaggaatgatataatcttcaacaat--ggggagtgtgaggtgttaagcattgtcgaagatgtgaaggtt |
315 |
Q |
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| T |
12277378 |
ggcatgctatggtgtggatgttatggaaaaggaggaatgatataatcttcaacaatggggggagtgtgaggtgttaagcattgtcgaagatgtgaaggtt |
12277279 |
T |
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| Q |
316 |
ctgtcgtggagatggagtttatctaggttggagatccctttgtgcttgttttatgagtggtcttgggatccgaatgattgttttcgtcgggcagtggtgt |
415 |
Q |
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| T |
12277278 |
ctgttgtggagatggagtttatctaggttggagatccattcgtgcttgttttacgagtggtcttgggatccgaatgattgtttgcgttgggcagtggtgt |
12277179 |
T |
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| Q |
416 |
agtggagtgggcacctgctgattttggtgctgctgtggtctggtgtgtttattctgctggtgtgcagggccgtctgtggctgtttttcgctgatctgtg |
514 |
Q |
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| T |
12277178 |
agtggagtgggcacctgctgattttggtgctgctgtggtctggtgtgtttattctgctgctgcgcagggccgtctgtggctgtttttcgctgatctgtg |
12277080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 154 - 398
Target Start/End: Original strand, 8720823 - 8721067
Alignment:
| Q |
154 |
cattgggagtgttggattaatatggcaatgaacaaaagggttcgtaagggatatcgtctcatttggcatgctatggtgtggatgttatggaaaaggagga |
253 |
Q |
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|||||||||||||||| ||||||||| || || || | ||||||||||| ||||| |||||||||||||| | || ||| |||||||||||| |||| |
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| T |
8720823 |
cattgggagtgttggaataatatggcgattaataagaaagttcgtaaggggtatcggctcatttggcatgcaacagtatggttgttatggaaaattagga |
8720922 |
T |
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| Q |
254 |
atgatataatcttcaacaatggggagtgtgaggtgttaagcattgtcgaagatgtgaaggttctgtcgtggagatggagtttatctaggttggagatccc |
353 |
Q |
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| T |
8720923 |
atgacaaaatctttaacaatggggggtgtgacgtgtctcgtatcgttgaagaggtgaaggttttgtcgtggagatggagtctaacgagattggatatacc |
8721022 |
T |
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| Q |
354 |
tttgtgcttgttttatgagtggtcttgggatccgaatgattgttt |
398 |
Q |
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| T |
8721023 |
tgagtgtttgttttatgagtgggcgtgggacccgaatgagtgttt |
8721067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 452
Target Start/End: Original strand, 34543300 - 34543380
Alignment:
| Q |
372 |
gtggtcttgggatccgaatgattgttttcgtcgggcagtggtgtagtggagtgggcacctgctgattttggtgctgctgtg |
452 |
Q |
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| T |
34543300 |
gtggtcttgggatccgaatgattgtttgtgtcgggcagcggtgtagtggggtggccaactgctggttttgttgctggtgtg |
34543380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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