View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16468_low_8 (Length: 525)
Name: NF16468_low_8
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 24 - 521
Target Start/End: Complemental strand, 43263778 - 43263281
Alignment:
| Q |
24 |
gagcagctacttaattagctagcccaattaatatatgtaaatcacactaattaatttcactcataattggggtatgaagaaagcaaattactaggtatgc |
123 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43263778 |
gagcagctacttaattagctagcccaattgatatatgtaaatcacactaattaatttcactcataattggggtatgaagaaagcaaattactaggtatgc |
43263679 |
T |
|
| Q |
124 |
atggagaattcctccaagccctagcatgcatcttaagtatctcccttgctttctccttagtcttacttccacaatcaacttgaagaaccaaacaaagctt |
223 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43263678 |
atggagaattcctccatgccctagcatgcatcttaagtatctcccttgctttctccttagtcttacttccacaatcaacttgaagaaccaaacaaagctt |
43263579 |
T |
|
| Q |
224 |
agccacaacaccaagtttaagcatttcttgaacaacattaggagttgcagagaatcttgaaacagacaacagaatccttacagctctatcattcgcaagt |
323 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43263578 |
agccacaacaccaagtttaagcatttcttgaacaacattaggagttgcagagaatcttgaaacagacaacagaatccttacagccctatcattcgcaagt |
43263479 |
T |
|
| Q |
324 |
gtcgaaacccttagaatcttcttagaaacaacagcaagacctgctgcatgtctcaaaagttcagctcttccttcagcacactgacaaagattctccaaca |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43263478 |
gtcgaaacccttagaatcttcttagaaacaacagcaagacctgctgcatgtctcaaaagttcagctcttccttcagcacactgacaaagattctccaaca |
43263379 |
T |
|
| Q |
424 |
aaaccaacatcatttcatttggttttctgtctttgcaattttctaacagaagttctatcagaacaggaactgttcctgcttcaacacctttgattctg |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43263378 |
aaaccaacatcatttcatttggttttctgtctttgcaattttctaacagaagttctatcagaacaggaactgttcctgcttcaacacctttgattctg |
43263281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 93 - 354
Target Start/End: Original strand, 24889913 - 24890174
Alignment:
| Q |
93 |
gggtatgaagaaagcaaattactaggtatgcatggagaattcctccaagccctagcatgcatcttaagtatctcccttgctttctccttagtcttacttc |
192 |
Q |
| |
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|||||||||| ||| |||||| ||||||||| |||||||| |||||| | | | ||||| ||||| |||||||||||||||||||| | |||| ||| |
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| T |
24889913 |
gggtatgaagcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttc |
24890012 |
T |
|
| Q |
193 |
cacaatcaacttgaagaaccaaacaaagcttagccacaacaccaagtttaagcatttcttgaacaacattaggagttgcagagaatcttgaaacagacaa |
292 |
Q |
| |
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||| |||||||||||||||||||||||||||||| |||||||||| | | | |||||||||||||||| | | || ||||| |||||||||||||| | |
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| T |
24890013 |
cactatcaacttgaagaaccaaacaaagcttagcaacaacaccaattctcaacatttcttgaacaacaaaatgtgtagcagaaaatcttgaaacagatag |
24890112 |
T |
|
| Q |
293 |
cagaatccttacagctctatcattcgcaagtgtcgaaacccttagaatcttcttagaaacaa |
354 |
Q |
| |
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||||| || |||||||||||||| || | ||| |||||||| | ||||||||| ||||||| |
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| T |
24890113 |
aagaattctcacagctctatcattagccattgttgaaaccctcaaaatcttctttgaaacaa |
24890174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 93 - 354
Target Start/End: Complemental strand, 24900054 - 24899793
Alignment:
| Q |
93 |
gggtatgaagaaagcaaattactaggtatgcatggagaattcctccaagccctagcatgcatcttaagtatctcccttgctttctccttagtcttacttc |
192 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||| |||||||| |||||| | | | ||||| ||||| |||||||||||||||||||| | |||| ||| |
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| T |
24900054 |
gggtatgaagcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttc |
24899955 |
T |
|
| Q |
193 |
cacaatcaacttgaagaaccaaacaaagcttagccacaacaccaagtttaagcatttcttgaacaacattaggagttgcagagaatcttgaaacagacaa |
292 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||| | | | |||||||||||||||| | | || ||||| |||||||||||||| | |
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| T |
24899954 |
cactatcaacttgaagaaccaaacaaagcttagcaacaacaccaattctcaacatttcttgaacaacaaaatgtgtagcagaaaatcttgaaacagatag |
24899855 |
T |
|
| Q |
293 |
cagaatccttacagctctatcattcgcaagtgtcgaaacccttagaatcttcttagaaacaa |
354 |
Q |
| |
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||||| || |||||||||||||| || | ||| |||||||| | ||||||||| ||||||| |
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| T |
24899854 |
aagaatactcacagctctatcattagccattgttgaaaccctcaaaatcttctttgaaacaa |
24899793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 93 - 354
Target Start/End: Complemental strand, 24907513 - 24907252
Alignment:
| Q |
93 |
gggtatgaagaaagcaaattactaggtatgcatggagaattcctccaagccctagcatgcatcttaagtatctcccttgctttctccttagtcttacttc |
192 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||| |||||||| |||||| | | | ||||| ||||| |||||||||||||||||||| | |||| ||| |
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| T |
24907513 |
gggtatgaagcaagtaaattaaaaggtatgcaatgagaattcatccaagactttgaatgcaatttaagaatctcccttgctttctcctttgccttatttc |
24907414 |
T |
|
| Q |
193 |
cacaatcaacttgaagaaccaaacaaagcttagccacaacaccaagtttaagcatttcttgaacaacattaggagttgcagagaatcttgaaacagacaa |
292 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||| | | | |||||||||||||||| | | || ||||| |||||||||||||| | |
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| T |
24907413 |
cactatcaacttgaagaaccaaacaaagcttagcaacaacaccaattctcaacatttcttgaacaacaaaatgtgtagcagaaaatcttgaaacagatag |
24907314 |
T |
|
| Q |
293 |
cagaatccttacagctctatcattcgcaagtgtcgaaacccttagaatcttcttagaaacaa |
354 |
Q |
| |
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||||| || |||||||||||||| || | ||| |||||||| | ||||||||| ||||||| |
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| T |
24907313 |
aagaattctcacagctctatcattagccattgttgaaaccctcaaaatcttctttgaaacaa |
24907252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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