View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16468_low_9 (Length: 508)
Name: NF16468_low_9
Description: NF16468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16468_low_9 |
 | |
|
| [»] scaffold0989 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 20 - 494
Target Start/End: Complemental strand, 2655423 - 2654947
Alignment:
| Q |
20 |
ccatgctcattatatgaggaataaagatttttt-gtctctctttcttgaatccctcgaaacgtctccttgtgatttagttaaggaatgctcctcttgtgg |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2655423 |
ccatgctcattatataaggaataaagatttttttgtctctctttcttgaatccctcgaaacgtctccttgtgatttagttaaggaatgctcctcttgtgg |
2655324 |
T |
|
| Q |
119 |
ttccttatagcctttctaaacaacgtcctaaacatcctgtgctttcagaagagccttcattttgatacatcaattatcatgggtactccatttgatatat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
2655323 |
ttccttatagcctttctaaacaacgtcctaaacatcctgtgctttcagaagagccttcattttgatacatcaattatcatggatattccatttgatatat |
2655224 |
T |
|
| Q |
219 |
ggaacttgaaaggatgttccttcattgctagccatggctatggaaggattgannnnnnncataacctaacctcttatgcaactttgttggaaaaggagaa |
318 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2655223 |
ggaacttgaaaggatgttgcttcgttgctagccatggctatggaaggattgatttttctcataacctaacctcttatgcaactttgttggaaaaggagaa |
2655124 |
T |
|
| Q |
319 |
ggttatgttgagctttttgaaaggaattaaggatgagataatatttgatagaatgaccacgtctatttcttgagatgata-nnnnnnnnnnnnnnnnact |
417 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
2655123 |
gattatgttgagctttttgaaaggaattaaggatgagataatatttggtagaatgaccacatctatttcttgagatgatatttttttattcttttttact |
2655024 |
T |
|
| Q |
418 |
cgcttctacttgctttttactatcttggttgcaaatgataaactttcccctttttatagattccaatggagaattat |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2655023 |
cgcttctacttgctttttactatcttggttgcaaatgataaactttcccgtttttatagattccaatggagaattat |
2654947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 20118240 - 20118304
Alignment:
| Q |
300 |
ctttgttggaaaaggagaaggttatgttgagctttttgaaaggaattaaggatgagataatattt |
364 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| ||||||| |||| |||| ||||||| |
|
|
| T |
20118240 |
ctttgttggaaaaggagaaggttatattgagaactttgtgaggaatttaggaggagagaatattt |
20118304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 48 - 398
Target Start/End: Original strand, 836 - 1183
Alignment:
| Q |
48 |
tttttgtctctctttcttgaatccctcgaaacgtctccttgtgatttagttaaggaatgctcctcttgtggttccttatagcctttctaaacaacgtcct |
147 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||| | |||||| ||| |
|
|
| T |
836 |
tttttgtctctctttcttgaatccttcaaagtgtctctttgtgctttagttaaggaatcctcatcttgtgattccttatagcctttttcaacaacctccc |
935 |
T |
|
| Q |
148 |
aaacatcctgtgctttcagaagagccttcattttgatacatcaattatcatgggtactccatttgatatatggaacttgaaaggatgttccttcattgct |
247 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| | |||||||||| |||||||| ||||| | ||||||||| ||||||| || ||||| |
|
|
| T |
936 |
aaacatcatgtgctccaagaagagccatcattttgatgaagcaattatcataggtactccctttgagaagtggaacttggaaggatgccgctccattgac |
1035 |
T |
|
| Q |
248 |
agccatggctatggaaggattgannnnnnncataacctaacctcttatgcaactttgttggaaaaggagaaggttatgttgagctttttgaaaggaatta |
347 |
Q |
| |
|
||||| |||||||| ||| | || ||||||| |||| || | ||||||||||||||||||||| |||| ||||| |||| ||||||| |
|
|
| T |
1036 |
cgccataactatggaataattta---ttctcagaacctaagctctgataccactttgttggaaaaggagaagattatattgagaactttgtgaggaattt |
1132 |
T |
|
| Q |
348 |
aggatgagataatatttgatagaatgaccacgtctatttcttgagatgata |
398 |
Q |
| |
|
||||||||| ||||||||| ||||| || | |||||||||||||| |||| |
|
|
| T |
1133 |
aggatgagagaatatttgagagaataacaatttctatttcttgagaggata |
1183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 4157296 - 4157384
Alignment:
| Q |
119 |
ttccttatagcctttctaaacaacgtcctaaacatcctgtgctttcagaagagccttcattttgatacatcaattatcatgggtactcc |
207 |
Q |
| |
|
||||||||| ||||| | || ||| ||| ||||||| |||||| | |||||| ||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
4157296 |
ttccttataacctttttcaagaacctccaaaacatcatgtgctctaagaagaacctccattttgatacatctattatcataagtactcc |
4157384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University