View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16469_high_1_N (Length: 430)
Name: NF16469_high_1_N
Description: NF16469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16469_high_1_N |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 3855529 - 3855702
Alignment:
| Q |
13 |
tgagatggacatcatcaacaaacccattgactacagggtgaagccaacgaagcaacgaggcagagttgcaaaagcaagacgcagacaaaagagttaacgt |
112 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3855529 |
tgagatcgacatgatcaacaaacccattgactacagggtgaagccaacgaagcaacgaggcagagttgcaaaagcaagacgcagacaaaagagttaatgt |
3855628 |
T |
|
| Q |
113 |
tttgataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttggtcat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3855629 |
tttgataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttgttcat |
3855702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 216 - 405
Target Start/End: Original strand, 3855695 - 3855880
Alignment:
| Q |
216 |
ttgttcataatttatttatacataaaaatgtttatttcccttttatttattttnnnnnnnggaaatagcaaagaatacttgataaaattatttattttgg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3855695 |
ttgttcataatttatttatacataaaaatgtttatttcccctttattt----taaaaaaaggaaatagcaaagaatacttgataaaattatttattttgg |
3855790 |
T |
|
| Q |
316 |
tgtttgacaagcgtgatcatctgcttctacatcattctttgtgcgatggggtaatgatgaaagactacacaattccaatttagaatttgt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3855791 |
tgtttgacaagcgtgatcatctgcttctacatcattctttgtgcgatggggtaatgttgaaagactacacaattccaatttagaatttgt |
3855880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 4141041 - 4140973
Alignment:
| Q |
66 |
aacgaggcagagttgcaaaagcaagacgcagacaaaagagttaacgttttgataggaggctgtctgtca |
134 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4141041 |
aacgaggcagagttgcagaagcgagacgcggacaaaagagttaatgttttgataggtagctgtctgtca |
4140973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University