View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16469_high_2 (Length: 402)
Name: NF16469_high_2
Description: NF16469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16469_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 21 - 373
Target Start/End: Complemental strand, 42445698 - 42445346
Alignment:
| Q |
21 |
acatcatctgagagactgaaaccattgagttcatcattcatgagaatcatggcggcaccacctgctccttgtacttcctgtcctttggcaattcttccta |
120 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42445698 |
acatcagctgagagactgaaaccattgagttcatcattcatgagaatcatggcggcaccacctgctctttgtacttcctgtcctttggcaattcttccta |
42445599 |
T |
|
| Q |
121 |
taccccctcccctctcacacaaaacaacctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctactttgccatttattcc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445598 |
taccccctcccctctcacacaaaacaacctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctactttgccatttattcc |
42445499 |
T |
|
| Q |
221 |
tgcatatgctaagggcaacagtgttggagagaaatcggaaggctggaaaacagattcgccctcaaattcttccccatttccaagcactgctgttgccaca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445498 |
tgcatatgctaagggcaacagtgttggagagaaatcggaaggctggaaaacagattcgccctcaaattcttccccatttccaagcactgctgttgccaca |
42445399 |
T |
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| Q |
321 |
atggttctgtcaatagtgcttgctccaactgtgagcatccatggggctccatt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445398 |
atggttctgtcaatagtgcttgctccaactgtgagcatccatggggctccatt |
42445346 |
T |
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