View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1646_high_4 (Length: 368)
Name: NF1646_high_4
Description: NF1646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1646_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 21 - 354
Target Start/End: Original strand, 54794390 - 54794723
Alignment:
| Q |
21 |
aatgaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcacactctattctgtagtatctatttggcaatagtttaagtagt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794390 |
aatgaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcacactctattctgtagtatctatttggcaatagtttaagtagt |
54794489 |
T |
|
| Q |
121 |
ttataagttaaactagtagctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattaggaagcgagc |
220 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54794490 |
ttataagttaaactagtagctaatagactatagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattagtaagcgagc |
54794589 |
T |
|
| Q |
221 |
taactgatcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataagtctat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54794590 |
taactgatcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactaatttacaagtttgtcaaataagataagtctat |
54794689 |
T |
|
| Q |
321 |
gtcaaacaaactcaagcttcacacctgacctatg |
354 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
54794690 |
gtcaaacaaactcaagcttcacacctgacctatg |
54794723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 52287088 - 52287320
Alignment:
| Q |
21 |
aatgaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcacactctattctgtagtatctatttggcaatagtttaagtagt |
120 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52287088 |
aatgaaatgattggtttccataaatgagtcaagggtgtgacttgggtcagtttattcacactccattctgtagtatctatttggcaatagtttaagtagt |
52287187 |
T |
|
| Q |
121 |
ttataagttaaactagtagctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattaggaagcgagc |
220 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |
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| T |
52287188 |
ttataagttaaactagtagctaatggactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattagttagcaaac |
52287287 |
T |
|
| Q |
221 |
taactgatcaacataaaatgacataaaagatat |
253 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
52287288 |
taactgatcaacataaaatgacataaaagatat |
52287320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 261 - 354
Target Start/End: Original strand, 52287391 - 52287484
Alignment:
| Q |
261 |
aagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataagtctatgtcaaacaaactcaagcttcacacctgacctatg |
354 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
52287391 |
aagctttaccacgagtaaccacaaattagtttacaagtttgtcaaataagataggtctatgtcaaacaaactcaagcttcacacctgacatatg |
52287484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 96 - 253
Target Start/End: Original strand, 802311 - 802468
Alignment:
| Q |
96 |
tctatttggcaatagtttaagtagtttataagttaaactagtagcta--atagactacagttgaaagtttataaatgaaaagctagttgattgatattca |
193 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| ||| |||| | ||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
802311 |
tctatttggcaatagtgtaagtagtttataagttaa-ctaatagcaactatagattatagttgaaagtttataaatgaaaagctagttgattgcaattca |
802409 |
T |
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| Q |
194 |
agtggttgttaaaattaggaagcgagctaactgatcaacataaaatgacataaaagatat |
253 |
Q |
| |
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||||||||||| ||||| |||| ||||||||| ||||| ||||||||| |||||||| |
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| T |
802410 |
agtggttgttagaattaattggcgaactaactgataaacat-aaatgacatgaaagatat |
802468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 802251 - 802309
Alignment:
| Q |
22 |
atgaaatgattggttcccataaatgagtcaagggtgtgacttggttcagtttattcaca |
80 |
Q |
| |
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||||||||||||||| |||||| ||||| |||||| |||||||| ||| ||||||||| |
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| T |
802251 |
atgaaatgattggtttccataattgagttaagggtatgacttgggtcaagttattcaca |
802309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 34618543 - 34618484
Alignment:
| Q |
152 |
agttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattag |
211 |
Q |
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| T |
34618543 |
agttgaaagcttatagctgaaaaactagttgattgatattaaagtgtttggtaaaattag |
34618484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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