View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1646_high_9 (Length: 248)
Name: NF1646_high_9
Description: NF1646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1646_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 51363470 - 51363546
Alignment:
| Q |
18 |
ttttttgttgttgataaatctgttaccctttctatgaatgctcaaggagtgccttgatacaaagacagttgggcgct |
94 |
Q |
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| T |
51363470 |
ttttttgttgttgataaatctgttaccctttctatgaatgctcaaggagtgccttgatacaaagacagttgggcgct |
51363546 |
T |
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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 51363555 - 51363654
Alignment:
| Q |
140 |
aatcaaatgctttcaaattctctctcatattaatctgctaatcttataatcatctaacaaattactatattcaatctgcta-atcttgggtttacctttg |
238 |
Q |
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| T |
51363555 |
aatcaaatgctttcaaattctctctcatattaatctgctaatcttacaatcatctaacaaattactatattcaaatttcaacatcttgggtttacctttg |
51363654 |
T |
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