View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1646_low_10 (Length: 237)
Name: NF1646_low_10
Description: NF1646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1646_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 32 - 222
Target Start/End: Complemental strand, 54794371 - 54794181
Alignment:
| Q |
32 |
ccgtagagtagattgttgtattgaattaaaatgcactattaagctattaactaattagatattagacgactttcaatataaacctaaattagcatattat |
131 |
Q |
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| T |
54794371 |
ccgtagagtagattgttgtattgaattaaaatgcactattaagctattaactaattagatattagacgactttcaatataaacctaaattagtatattat |
54794272 |
T |
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| Q |
132 |
ttaatgctgcccccgacaagagtctaaaagttgttacatgtgcctatgaatgcaactgggttaccatgtcattctttccaaattactattt |
222 |
Q |
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| T |
54794271 |
ttaatgctgcccctgacaagagtctaaaagttgttacatgtgcctatgaatgcaactgggttaccatgtcattctttccaaattactattt |
54794181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 35 - 222
Target Start/End: Complemental strand, 52287071 - 52286862
Alignment:
| Q |
35 |
tagagtagattgttgtattgaattaaaatgcactattaagctattaactaatta--------------gatattagacgactttcaatataaacctaaat |
120 |
Q |
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| T |
52287071 |
tagaatagattgatgtattgaattaaaatgcactattaagctattaactaattaaataactcattctagatattagacgacttttaatataaacttaaat |
52286972 |
T |
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| Q |
121 |
tagcatattatttaat--------gctgcccccgacaagagtctaaaagttgttacatgtgcctatgaatgcaactgggttaccatgtcattctttccaa |
212 |
Q |
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| T |
52286971 |
tagtatattatttaattatttaatgctgcacccgacaagagtctaaaagttgttacatgtgcctatgattgcaactgggttaccatgtcattctttccaa |
52286872 |
T |
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| Q |
213 |
attactattt |
222 |
Q |
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| T |
52286871 |
attactattt |
52286862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 802120 - 802053
Alignment:
| Q |
127 |
attatttaatgctgcccccgacaagagtctaaaagttgttacatgtgcctatgaatgcaactgggtta |
194 |
Q |
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| T |
802120 |
attatttaatactgcacccgacaagagtctaaaagttgttacatgtgcatatgaatgcaactgggtta |
802053 |
T |
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