View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1646_low_7 (Length: 267)

Name: NF1646_low_7
Description: NF1646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1646_low_7
NF1646_low_7
[»] chr4 (5 HSPs)
chr4 (1-252)||(46462471-46462722)
chr4 (1-56)||(38785765-38785820)
chr4 (1-56)||(41554086-41554141)
chr4 (1-55)||(3435241-3435295)
chr4 (1-50)||(35820525-35820574)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-55)||(133228-133282)
[»] chr1 (5 HSPs)
chr1 (1-55)||(27732277-27732331)
chr1 (1-54)||(34500182-34500235)
chr1 (1-49)||(27732187-27732235)
chr1 (1-55)||(29070708-29070762)
chr1 (1-39)||(10325296-10325334)
[»] chr7 (1 HSPs)
chr7 (1-55)||(27115326-27115380)
[»] chr8 (2 HSPs)
chr8 (1-54)||(39910460-39910513)
chr8 (11-56)||(13958231-13958276)
[»] chr5 (3 HSPs)
chr5 (1-54)||(27385559-27385612)
chr5 (1-55)||(1023741-1023795)
chr5 (1-42)||(13689097-13689138)
[»] chr3 (6 HSPs)
chr3 (1-55)||(53739534-53739588)
chr3 (1-56)||(39009903-39009958)
chr3 (1-55)||(30675079-30675133)
chr3 (1-55)||(35504880-35504934)
chr3 (1-55)||(39009830-39009884)
chr3 (1-55)||(53739438-53739492)
[»] chr2 (3 HSPs)
chr2 (1-55)||(23962268-23962322)
chr2 (1-55)||(25312457-25312511)
chr2 (1-55)||(23962364-23962418)
[»] chr6 (1 HSPs)
chr6 (6-55)||(29168476-29168525)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 46462471 - 46462722
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagtaagaatagtaaaccacagaagttttataccaaaaatggtcaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46462471 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagtaagaatagtaaaccacagaagttttataccaaaaatggtcaaataa 46462570  T
Q  101 atagatagaaccccttgtatacaaaaattccaaagaggtgcaatgtacaaaaataaagaaaacaaacggtatatatgcttaaccttgatctccaatttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46462571 atagatagaaccccttgtatacaaaaattccaaagaggtgcaatgtacaaaaataaagaaaacaaacggtatatatgcttaaccttgatctccaatttcc 46462670  T
Q  201 aatacagatagattgaagataacaatgagcacaatgcatacaaagaagtacg 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46462671 aatacagatagattgaagataacaatgagcacaatgcatacaaagaaatacg 46462722  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 38785820 - 38785765
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagtaa 56  Q
    |||||||||||||||||||||||||| |||| |||||||||| | |||||||||||    
T  38785820 tattcaatgaacctaaaaagtgaaaagttgcatataattgagactggagggagtaa 38785765  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41554086 - 41554141
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagtaa 56  Q
    |||| ||||||||||||||||||||||||||||| | ||||| ||| |||||||||    
T  41554086 tattgaatgaacctaaaaagtgaaaaattgcttacatttgagaccgaagggagtaa 41554141  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3435241 - 3435295
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||| ||||||||||||||||||||| ||||||| | ||||| ||||||||||||    
T  3435241 tattgaatgaacctaaaaagtgaaaagttgcttacatttgagaccggagggagta 3435295  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35820574 - 35820525
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagg 50  Q
    |||| ||||||||||||||||||||| ||||||| | ||||| |||||||    
T  35820574 tattgaatgaacctaaaaagtgaaaagttgcttacatttgagaccggagg 35820525  T

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Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 133228 - 133282
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  133228 tattcaatgaacctaaaaagtgaaaaattgcttacatttgagaccggagggagta 133282  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27732277 - 27732331
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||    
T  27732277 tattcaatgaacctaaaaagtgaaaagttgcttataattgagaccggaggaagta 27732331  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34500182 - 34500235
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagt 54  Q
    ||||||||||| |||||||||||||||||||||||||||||  | |||||||||    
T  34500182 tattcaatgaatctaaaaagtgaaaaattgcttataattgaaactggagggagt 34500235  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27732235 - 27732187
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggag 49  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||||||    
T  27732235 tattcaatgaacctaaaaagtgaaaagttgcctataattgagaccggag 27732187  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29070708 - 29070762
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||| ||||||||||||| ||||||||||||||| | ||||| ||||||||||||    
T  29070708 tattgaatgaacctaaaatgtgaaaaattgcttacatttgagaccggagggagta 29070762  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10325334 - 10325296
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataatt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  10325334 tattcaatgaacctaaaaagtgaaatgttgcttataatt 10325296  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27115326 - 27115380
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    ||||||||||| |||||||||||||  ||||||||||||||| ||||||||||||    
T  27115326 tattcaatgaatctaaaaagtgaaaggttgcttataattgagaccggagggagta 27115380  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 39910513 - 39910460
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagt 54  Q
    ||||||||||| |||||||||||||||||||||||||||||  | |||||||||    
T  39910513 tattcaatgaatctaaaaagtgaaaaattgcttataattgaaactggagggagt 39910460  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 13958231 - 13958276
Alignment:
Q  11 acctaaaaagtgaaaaattgcttataattgaggccggagggagtaa 56  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||||    
T  13958231 acctaaaaagtgaaatattacttataattgagaccggagggagtaa 13958276  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27385559 - 27385612
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagt 54  Q
    |||||||||||||||||| ||||||| |||||||||||| || |||||||||||    
T  27385559 tattcaatgaacctaaaaggtgaaaagttgcttataattaagaccggagggagt 27385612  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1023741 - 1023795
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||||||||||||||||||  ||||| || |||||||||||| ||| ||||||||    
T  1023741 tattcaatgaacctaaaaaaagaaaagttacttataattgagaccgtagggagta 1023795  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13689097 - 13689138
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgag 42  Q
    |||||||||||| |||||||| ||||||| ||||||||||||    
T  13689097 tattcaatgaacttaaaaagtaaaaaatttcttataattgag 13689138  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 53739534 - 53739588
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||| ||||||||||||||||||||| ||||||| | ||||| ||||||||||||    
T  53739534 tattgaatgaacctaaaaagtgaaaagttgcttacatttgagaccggagggagta 53739588  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39009903 - 39009958
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagtaa 56  Q
    |||| ||||||| ||||||||||||| ||||||| | ||||| |||||||||||||    
T  39009903 tattgaatgaacttaaaaagtgaaaagttgcttacatttgagaccggagggagtaa 39009958  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30675133 - 30675079
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||| ||||||||||||||||||||| || |||| | ||||| ||||||||||||    
T  30675133 tattaaatgaacctaaaaagtgaaaagtttcttacatttgagaccggagggagta 30675079  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35504880 - 35504934
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||| ||||||| |||||||||||||||| |||| | ||||| ||||||||||||    
T  35504880 tatttaatgaacttaaaaagtgaaaaatttcttacatttgagaccggagggagta 35504934  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39009884 - 39009830
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||| ||||||||| ||||||||||| ||||||| | ||||| ||||||||||||    
T  39009884 tattgaatgaacctcaaaagtgaaaagttgcttacatttgagaccggagggagta 39009830  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 53739492 - 53739438
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||| |||||||||||||||| |||| ||||||| | ||||| ||||||||||||    
T  53739492 tattgaatgaacctaaaaagtaaaaagttgcttacatttgagaccggagggagta 53739438  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23962322 - 23962268
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||| ||||||||||||||||||||| ||||||| | ||||| ||||||||||||    
T  23962322 tattgaatgaacctaaaaagtgaaaagttgcttacatttgagaccggagggagta 23962268  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25312511 - 25312457
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||| ||||||| ||||||||||||||||||||| | ||||| ||||||||||||    
T  25312511 tattgaatgaacataaaaagtgaaaaattgcttacatttgagaccggagggagta 25312457  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23962364 - 23962418
Alignment:
Q  1 tattcaatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||| |||||| ||||||||| |||| ||||||| ||||||| ||||||||||||    
T  23962364 tattgaatgaatctaaaaagtaaaaagttgcttacaattgagaccggagggagta 23962418  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 29168525 - 29168476
Alignment:
Q  6 aatgaacctaaaaagtgaaaaattgcttataattgaggccggagggagta 55  Q
    |||||| ||||||||| |||| |||||||||| |||| ||||||||||||    
T  29168525 aatgaatctaaaaagtcaaaatttgcttataaatgagaccggagggagta 29168476  T

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