View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16470_high_1 (Length: 608)
Name: NF16470_high_1
Description: NF16470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16470_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 12 - 593
Target Start/End: Original strand, 52242325 - 52242901
Alignment:
| Q |
12 |
gagaagaagcaagtggtcgaagagcaggactgaaagcagcaccatcacgtctctttggtgttgaacacccacttggagtttgagactgtgaatcttctcc |
111 |
Q |
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| T |
52242325 |
gagaagaagcaagtggtcgaagagcaggactgaaagcagcaccatcacgtctctttggtgttgaacacccacttggagtttgagactgtgaatcttctcc |
52242424 |
T |
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| Q |
112 |
tccaaatatatcatcaaagaaatcttttccttttcttctcctcctaactccactatcctcaccaaacaccggtttctcgctctcaggcggaggaggccaa |
211 |
Q |
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| T |
52242425 |
tccaaatatatcatcaaaaaaatcttttccttttcttctcctcctagctccactatcctcaccaaacactggtttctcgctctcaggcggaggaggccaa |
52242524 |
T |
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| Q |
212 |
ctacaccaacccgtttcaccttcctctcctccactcaccgatgacctcctccgcggcggtcccccaaacacatcattaaaatcaacgtctgatttcctct |
311 |
Q |
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| T |
52242525 |
ctacaccaacccgtttcaccttcctctcctccactcaccgatgacctcctccgcggtggtcccccaaacacatcattaaaatcaacgtctgatttcctct |
52242624 |
T |
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| Q |
312 |
gtgatgtgctcggattgttactactctcatcttcatcatatcctaactgaataccctctcgttgttcagaataactataaaatctctccattcaaaatct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52242625 |
gtgatgtgctcggattgttactactctcatcttcatcatatcctaactgaataccctctcgttgttcagaataactataaaatctctccattcaaaatct |
52242724 |
T |
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| Q |
412 |
ggcgggaaattgttattgttatagcgaggaatggaacataacagaacagaacagaactgaactgaactgagaggtttgtgagaaagaacaatgatgtcag |
511 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52242725 |
ggcgggaaattgttattgttatagcgaggaatgg-----aatggaacagaacagaactgaactgaactgagaggtttgtgagaaagaacaatgatgtcag |
52242819 |
T |
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| Q |
512 |
tgaagagaattttgaaatgataataatttgaattgtcaccgaggacagagttaggtggcaatggaaatctagtagaaattgc |
593 |
Q |
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| T |
52242820 |
tgaagagaattttgaaataataataatttgaattgtcaccaaggacagagttaggtggcactggaaatctagtagaaattgc |
52242901 |
T |
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