View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16470_high_2 (Length: 571)
Name: NF16470_high_2
Description: NF16470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16470_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 152 - 551
Target Start/End: Original strand, 32992781 - 32993180
Alignment:
| Q |
152 |
tcttcatgaacccttcattgtacttattattcatgtgttcttgtttgtatatattccaatgtctggcgaatatattaatctatgtgacaacccatcaaga |
251 |
Q |
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| T |
32992781 |
tcttcatgaacccttcattgtacttattattcatgtgttcttgtttgtatatattccaatgtctggcgaatatattaatctatgtgacaacccatcaaga |
32992880 |
T |
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| Q |
252 |
gtgggaagcattaattctcaagaaaatagtgcattannnnnnnccatttttcaacttggtatttaaagctaggttacctagctagtgcctcccagcatgg |
351 |
Q |
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| T |
32992881 |
gtgggaagcattaattctcaagaaaatagtgcattatttttttccatttttcaacttggtatttaaagctaggttacctagctagtgcctcccagcatgg |
32992980 |
T |
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| Q |
352 |
cacggctatggcttcctttgagaatttcaagcacaccacgatagacaatatgcttctttggtgtaattcgattctccaatctagttgaggtaatcatttt |
451 |
Q |
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| T |
32992981 |
cacggctatggcttcctttgagaatttcaagcacaccacgatagacaatatgcttctttggtgtaattcgattctccaatctagttgaggtaatcatttt |
32993080 |
T |
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| Q |
452 |
cgaagcttgtttatattgggattcaaaattttgatttaccacgttgtgagagtctagttgagtccagctcctctatcacatcacatccaacatatggtat |
551 |
Q |
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| T |
32993081 |
cgaagcttgtttaaattgggattcaaaattttggtttaccacattatgagagtctagttgagtccagcccctctatcacatcacatccaacatatggtat |
32993180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 32992635 - 32992670
Alignment:
| Q |
19 |
tttatcgagaggacttgaaaaatcatgtacatcttc |
54 |
Q |
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| T |
32992635 |
tttatcgagaggacttgaaaaatcatgtacatcttc |
32992670 |
T |
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