View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16470_high_4 (Length: 437)
Name: NF16470_high_4
Description: NF16470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16470_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 12065078 - 12065491
Alignment:
| Q |
19 |
attttagaggggcatcgcaggagtacttggcagatgattctagtacccatcttgatttctagctttcttccatttttccctgttataggatttcttgtgc |
118 |
Q |
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| T |
12065078 |
attttagaggggcatcgcaggagtacttggcagatgattctagtacccatcttgatttctagctttcttccatttttccctgttataggatttcttgtgc |
12065177 |
T |
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| Q |
119 |
aatccttcaaagatattcttcaatctagagtcaaaaagccccatcactctatgtcttaaaaaaggttaatacatgccgaccagaaaatatatttcagcaa |
218 |
Q |
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| T |
12065178 |
aatccttcaaagagattcttcaatctagagtcaaaaagccccatcactctatgtcttaaaaaaggttaatacatgccgaccggaaaatatatttcagcaa |
12065277 |
T |
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| Q |
219 |
aagtataatgtgagtgatcattgcaactatggcaaatgaataatgtaactgctctctctttctactagcccgtaaacttgatatgtataacaaccttgtg |
318 |
Q |
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| T |
12065278 |
aagtataatgtgagtgatcattgcaactatggcaaatgaataatgtaactactctctctttctactagcccgtaaacttgatatgtataacaaccttgtg |
12065377 |
T |
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| Q |
319 |
tttcatactttttcataattaaatatatatgactctctctttctcatgttataaagtttatcttttatgaaattgggttagtagcagcgctctttctctt |
418 |
Q |
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| T |
12065378 |
tttcatactttttcataattaaatatatatgactctctctttctcatgttataaagtttatcttttatgaaattgggttagtagcagtgctctttctctt |
12065477 |
T |
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| Q |
419 |
atattcatctcact |
432 |
Q |
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| T |
12065478 |
atattcatttcact |
12065491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 12101862 - 12101799
Alignment:
| Q |
199 |
cagaaaatatatttcagcaaaagtataatgtgagtgatcattgcaactatggcaaatgaataatgt |
264 |
Q |
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| T |
12101862 |
cagaaaaaatatttcagcaaaagta--atgtgagtgatcattgacactatggcaagtgaataatgt |
12101799 |
T |
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