View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16470_low_10 (Length: 203)
Name: NF16470_low_10
Description: NF16470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16470_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 1912000 - 1912161
Alignment:
| Q |
1 |
atcttgaaatttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctgtttttaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1912000 |
atcttgaaatttcccagattcaatagcaggcaatcttctcaggagacttgacacttgccttaatagtgaattctcacaaggaacgtcacctgtttttaaa |
1912099 |
T |
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| Q |
101 |
caaaaagattaaatggtattacttcagggagatacaatataggtaggctatgtataatatat |
162 |
Q |
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| T |
1912100 |
caaaaagtttaaatggtattacttcagggagatacaatataggtaggctatgtataatatat |
1912161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 2933716 - 2933548
Alignment:
| Q |
1 |
atcttgaaatttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctgtttttaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2933716 |
atcttgaaatttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtaaattctcacaaggaacgtcacctgtttttaaa |
2933617 |
T |
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| Q |
101 |
caa---aaagattaaatggtattacttcagggagatacaatataggtaggctatgtataatatatggtt |
166 |
Q |
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| T |
2933616 |
agaattaaggtttaaatggttttacttcagggagatacaatataggcaggctatgtataatatatggtt |
2933548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 1895128 - 1895295
Alignment:
| Q |
1 |
atcttgaaatttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctgttttt-aa |
99 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
1895128 |
atcttgaaatttcccagattcaaaagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctatttttaaa |
1895227 |
T |
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| Q |
100 |
acaa-aaagattaaatggtattacttcagggagatacaatataggtaggctatgtataatatatggtt |
166 |
Q |
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| T |
1895228 |
acaataaggtttaaatggtttaacttcagggagatacaatataggttggctatgtataatatatggtt |
1895295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 1904574 - 1904741
Alignment:
| Q |
1 |
atcttgaaatttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctgttttt-aa |
99 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
1904574 |
atcttgaaatttcccagattcaaaagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaacgtcacctatttttaaa |
1904673 |
T |
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| Q |
100 |
acaa-aaagattaaatggtattacttcagggagatacaatataggtaggctatgtataatatatggtt |
166 |
Q |
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|||| || | ||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1904674 |
acaataaggtttaaatggtttaacttcagggagatacaatataggttggctatgtataatatatggtt |
1904741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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