View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16470_low_3 (Length: 481)
Name: NF16470_low_3
Description: NF16470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16470_low_3 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 33950980 - 33950530
Alignment:
| Q |
1 |
ggaacatcgaaaggacgcttaaaaagttgtccatcttcattgaatttgtgtacaaaattttcatggatgagaagctcaagaatttctctggccttataaa |
100 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |
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| T |
33950980 |
ggaacattgaaaggacgcttgaaaagttgtccatcttcattgaatt---------------catggttgagaagctcaagaatttctctggtcttataaa |
33950896 |
T |
|
| Q |
101 |
gcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagccataggaatcattctcagaagaacatttgcatgcactttctcctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
33950895 |
gcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagccataggaatcattctcagaagaacatgtacatgcactttctcctgc |
33950796 |
T |
|
| Q |
201 |
atcattttcttctatcagactatttatttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950795 |
atcattttcttctatcagactatttatttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaag |
33950696 |
T |
|
| Q |
301 |
attaacctcaatgatcgccttgaactttggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33950695 |
attaacctcaatgatcgccttgaactttggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcattaaattgaaatcttgttgtaa |
33950596 |
T |
|
| Q |
401 |
gggtaataatgtgtgtagcgctactcatgaatttgagattccttcttctgtttttgcctgtctgtg |
466 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950595 |
gggtaataatgtgtgtagcgctactcatgaatttgagattccttcttctgtttttgcctgtctgtg |
33950530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 33990465 - 33990013
Alignment:
| Q |
1 |
ggaacatcgaaaggacgcttaaaaagttgtccatcttcattgaatttgtgtacaaaattttcatggatgagaagctcaagaatttctctggccttataaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||| || || | ||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
33990465 |
ggaacatcgaaaggacgcttgaaaggtggtttagcttcattgaatttgtgttcaaaagtttcatagttgagaagctcaagaatttctctggccttataaa |
33990366 |
T |
|
| Q |
101 |
gcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagccataggaatcattctcagaagaacatttgcatgcactttctcctgc |
200 |
Q |
| |
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| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
33990365 |
gtgtctcttcaacatcatttacaataagagattggttctcatcaacaacatag------gaatcattctcagaagaacatttgcatgcactttcttctgc |
33990272 |
T |
|
| Q |
201 |
atcattttcttctatcagactatttatttcttctctggggtgatccaaatgatcattgtattgctttatatcttgtacaacgggagataaatcctttaag |
300 |
Q |
| |
|
|||||||||||||| ||| | || |||||||||||||| ||||||||||| ||||||||||||||||| ||||| || || ||| ||||||||| ||| |
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| T |
33990271 |
atcattttcttctaatagagtcttgatttcttctctgggatgatccaaatgttcattgtattgctttatgtcttgaaccacaagagttaaatccttcaag |
33990172 |
T |
|
| Q |
301 |
attaacctcaatgatcgccttgaactttggttcttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaa |
400 |
Q |
| |
|
||| ||||||| || |||||| |||||||| |||| ||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33990171 |
attgacctcaacaattgccttgcactttggtgctttcgtgctgtttcaactatttgagatattttgttcaagacatcatg------aaatcttgttgtaa |
33990078 |
T |
|
| Q |
401 |
gggtaataatgtgtgta---gcgctactcatgaatttgagattccttcttctgtttttgcctgtc |
462 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
33990077 |
gggtaataatatgtgtagtggcgctactcatgaatttgagattccttcctctgcttttgcctgtc |
33990013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 57 - 297
Target Start/End: Complemental strand, 33959580 - 33959346
Alignment:
| Q |
57 |
attttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagcca |
156 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| | ||||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
33959580 |
attttcgtggttgagaagctcaagaatttctcttggcttataaagtgtttcttcaacatcatttacaataagagattggttctcatcaacaacatag--- |
33959484 |
T |
|
| Q |
157 |
taggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggggtgatccaaatgatcat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
33959483 |
---gaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctattagactatttatttcctctctggggtgatccaaatgatcat |
33959387 |
T |
|
| Q |
257 |
tgtattgctttatatcttgtacaacgggagataaatccttt |
297 |
Q |
| |
|
||||||||||||| ||||| || || ||||||||||||||| |
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|
| T |
33959386 |
tgtattgctttatgtcttgaaccacaggagataaatccttt |
33959346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 57 - 436
Target Start/End: Complemental strand, 33973582 - 33973227
Alignment:
| Q |
57 |
attttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagcca |
156 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||| |||||||| ||| |
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| T |
33973582 |
attttcgtggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcatttacaataagagattggttctcatcaacaacgtag--- |
33973486 |
T |
|
| Q |
157 |
taggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggggtgatccaaatgatcat |
256 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| || |||| |
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|
| T |
33973485 |
---gaatcattctcaaaagaagatttgcatgcactttct---------------tctatcaaactatttatttcttctctgggttgatccaagtgttcat |
33973404 |
T |
|
| Q |
257 |
tgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttcttttgtgctttttgaagaatttg |
356 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| ||| || |||| |
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|
| T |
33973403 |
tgtaatgctttatatcttgtacaacgggagataaatcctttaagattaacctaaacaatagccttgaactttggttctttcgtgctgtttcaactatttc |
33973304 |
T |
|
| Q |
357 |
agatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgt---gtagcgctactcatgaatttga |
436 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
33973303 |
agatattttgttcaagacatca------ttaaatcttgttgtaagggtaataatatgtgtcgtggcgctactcatgaatttga |
33973227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 333 - 435
Target Start/End: Complemental strand, 33959349 - 33959247
Alignment:
| Q |
333 |
cttttgtgctttttgaagaatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
432 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33959349 |
ctttcgtgctttttgaagtatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgtgtagcgctactcatgaat |
33959250 |
T |
|
| Q |
433 |
ttg |
435 |
Q |
| |
|
||| |
|
|
| T |
33959249 |
ttg |
33959247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 10465 - 10341
Alignment:
| Q |
29 |
gtccatcttcattgaatttgtgtacaaaattttcatggatgagaagctcaagaatttctctggccttataaagcgtctcttcaacatcatttacagtaag |
128 |
Q |
| |
|
|||||| |||||| ||||| ||| |||||||||| | | | ||||| |||||||||||||||||||| ||||| ||||||| |||||||||||| ||||| |
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|
| T |
10465 |
gtccattttcattaaatttctgttcaaaattttccttgttaagaagttcaagaatttctctggccttgtaaagtgtctctttaacatcatttaccgtaag |
10366 |
T |
|
| Q |
129 |
agattggttctcctcaacaacatag |
153 |
Q |
| |
|
||||||||| || ||||| |||||| |
|
|
| T |
10365 |
agattggttatcatcaacgacatag |
10341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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