View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16470_low_5 (Length: 362)
Name: NF16470_low_5
Description: NF16470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16470_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 347
Target Start/End: Complemental strand, 37749422 - 37749099
Alignment:
| Q |
20 |
ctgttttatgttttggaaccatgattaattctgatgttataacatcatatcttctacaatatggttttctgttggtcctaatgatggaaggctttgctgc |
119 |
Q |
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| T |
37749422 |
ctgttttatgttttggaaccatgattaattctgatgttataacatcatatcttctacaatatggttttctgttggtcctaatgatggaaggctttgctgc |
37749323 |
T |
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| Q |
120 |
cacagaaaatggtatactcattggactatatatctctactttgaaggtttaacagatgagtagtacttttaaggtattgctttcaaatgaatgtggagga |
219 |
Q |
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| T |
37749322 |
cacagaaaatggtatactcattggactat----ctctactttgaaggtttaacagatgagtagtacttttaaggtattgctttcaaatgaatgtggagga |
37749227 |
T |
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| Q |
220 |
ggaagctatatatatcaactactaggattttttccttaaaacaaatatttactatcattttatttttgttgcattctgtattgtattgtattgtagcaat |
319 |
Q |
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| T |
37749226 |
ggaagctatatatatcaactactaggattttttccttaaaacaaatatttactatcattttgtttttgttgcattctgtattgtattgtattgtagcaat |
37749127 |
T |
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| Q |
320 |
cactagattaggtatatagttatatagt |
347 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37749126 |
cactagattaggtatatagttatatagt |
37749099 |
T |
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