View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16470_low_7 (Length: 328)

Name: NF16470_low_7
Description: NF16470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16470_low_7
NF16470_low_7
[»] chr8 (4 HSPs)
chr8 (35-133)||(13519258-13519356)
chr8 (35-133)||(13608791-13608889)
chr8 (246-314)||(13519473-13519541)
chr8 (246-314)||(13609008-13609076)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 13519258 - 13519356
Alignment:
Q  35 tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggc 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13519258 tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggc 13519356  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 13608791 - 13608889
Alignment:
Q  35 tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggc 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13608791 tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggc 13608889  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 13519473 - 13519541
Alignment:
Q  246 agggggatattaattatgtgggagaatggagagccataggttgttttaagtaagattgaaggtgaaaag 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13519473 agggggatattaattatgtgggagaatggagagccataggttgttttaagtaagattgaaggtgaaaag 13519541  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 13609008 - 13609076
Alignment:
Q  246 agggggatattaattatgtgggagaatggagagccataggttgttttaagtaagattgaaggtgaaaag 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609008 agggggatattaattatgtgggagaatggagagccataggttgttttaagtaagattgaaggtgaaaag 13609076  T

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