View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16470_low_8 (Length: 307)
Name: NF16470_low_8
Description: NF16470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16470_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 106 - 300
Target Start/End: Original strand, 1529718 - 1529912
Alignment:
| Q |
106 |
gcttcgtctgagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttcaaaggtgagtctattctttcattactttgctgtta |
205 |
Q |
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| T |
1529718 |
gcttcgtctgagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttcaaaggtgagtctattctttcattactttgctgtta |
1529817 |
T |
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| Q |
206 |
caacatcaagaatccctaaattaattttaaaattgcaaccttctaattatttggttatatgaaatcttctaatattgatacttatgttcatctca |
300 |
Q |
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| T |
1529818 |
caacatcaagaatccctaaattaattttaaaattgcaaccttctaattatttggttatatgaaatcttctaatattgatacttatgttcatctca |
1529912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 1529630 - 1529663
Alignment:
| Q |
18 |
aaaacctcgccgggacggccatgttcggcataac |
51 |
Q |
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| T |
1529630 |
aaaacctcgccgggacggccatgttcggcataac |
1529663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 106 - 300
Target Start/End: Original strand, 26841487 - 26841687
Alignment:
| Q |
106 |
gcttcgtctgagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttcaaaggtgagtctattctttcattactttg------ |
199 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
26841487 |
gcttcgtcggagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttcaaaggcgagtctattctttcgttactttgttgtgc |
26841586 |
T |
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| Q |
200 |
ctgttacaacatcaagaatccctaaattaattttaaaattgcaaccttctaattatttggttatatgaaatcttctaatattgatacttatgttcatctc |
299 |
Q |
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| T |
26841587 |
ctgttacaacatcaagaatccctaaattaattttaaaattgcaaccttctaattattgggttatatgaaatcttctaatattgatacttatgttcatctc |
26841686 |
T |
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| Q |
300 |
a |
300 |
Q |
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| T |
26841687 |
a |
26841687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 157 - 300
Target Start/End: Complemental strand, 22476949 - 22476806
Alignment:
| Q |
157 |
ttgctctttgcttcaaaggtgagtctattctttcattactttgctgttacaacatcaagaatccctaaattaattttaaaattgcaaccttctaattatt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22476949 |
ttgctctttgcttcaaaggtgagtctattctttcattactttgttgttacaacatgagaaatccctaaattaattttaaaattgcagccttctaattatt |
22476850 |
T |
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| Q |
257 |
tggttatatgaaatcttctaatattgatacttatgttcatctca |
300 |
Q |
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| T |
22476849 |
tggttatatgaaatcttctaatattgatacttatgttcatctca |
22476806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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